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@KoslickiLab

KoslickiLab

Welcome to the Koslicki lab 👋👋

The Koslicki lab focuses on computational biology. We are interested in developing efficient, mathematically sound approaches to extract insight from omics data. This puts our research squarely at the intersection of biology, mathematics, and computer science. We are particularly interested in the entire arc of developing computational biology methods: rigorous mathematical justification of a method, implementing the method into a tool usable by the community, applying the tool to pressing scientific problems, and finally using the results to inform further development of computational techniques.

Resources

  1. Contents in the shared_folder on the servers (KEGG, GTDB, etc.)
  2. Koslicki Lab Google Drive (requires Dr. Koslicki adding you to it)
  3. Print posters at PSU

Thesis Q&A

Thesis information: Let's share resources/questions/tips here for reference

Commencement information

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  1. useful_tools useful_tools Public

    Lab forum to share scripts, software, and technical issues

    Shell 2

  2. .github .github Public

    Public profile

  3. Koslicki-lab-PSU Koslicki-lab-PSU Public

    Website for Koslicki Lab.

    HTML 1

Repositories

Showing 10 of 47 repositories
  • frac-kmc Public

    Fast FracMinHash sketch generator

    KoslickiLab/frac-kmc’s past year of commit activity
    C++ 0 0 0 0 Updated Sep 22, 2024
  • fmh-funprofiler Public

    A functional profiler for metagenomes using FracMinHash

    KoslickiLab/fmh-funprofiler’s past year of commit activity
    Python 11 1 3 0 Updated Aug 30, 2024
  • Beta-diversity-of-mixtures-over-time Public

    Beta diversity of mixtures over time

    KoslickiLab/Beta-diversity-of-mixtures-over-time’s past year of commit activity
    Python 0 0 0 0 Updated Aug 24, 2024
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    KoslickiLab/bioconda-recipes’s past year of commit activity
    Shell 0 MIT 3,231 0 0 Updated Aug 23, 2024
  • YACHT Public

    A mathematically characterized hypothesis test for organism presence/absence in a metagenome

    KoslickiLab/YACHT’s past year of commit activity
    Python 28 MIT 7 9 2 Updated Aug 23, 2024
  • KoslickiLab/branch-lengths-assignment’s past year of commit activity
    Python 0 0 0 0 Updated Jul 30, 2024
  • KoslickiLab/sourmash_tutorial’s past year of commit activity
    0 0 0 0 Updated Jul 29, 2024
  • LLMFactCheck Public

    The "LLMFactCheck" is a powerful tool designed to semantic triples (subject–predicate–object) in different sources, ensuring the accuracy of references and enhancing the quality of your research.

    KoslickiLab/LLMFactCheck’s past year of commit activity
    Python 1 MIT 0 14 0 Updated Jul 28, 2024
  • DnDs-visualization Public

    A repo for the larger scale DnDs project, along with the visualization code

    KoslickiLab/DnDs-visualization’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jul 13, 2024
  • KoslickiLab/dnds-using-fmh’s past year of commit activity
    Python 0 0 1 0 Updated Jul 12, 2024

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