Update to nf-core last v2 version; incorporating GTDB #273
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| name: docker get genomes for mock CI/CD | |
| on: | |
| push: | |
| paths: | |
| - "workflows/**" | |
| - "subworkflows/**" | |
| - "modules/**" | |
| - "main.nf" | |
| - "lib/**" | |
| - "conf/**" | |
| - "docker/modules/**" | |
| branches: | |
| - main | |
| - dev | |
| pull_request: | |
| paths: | |
| - "workflows/**" | |
| - "subworkflows/**" | |
| - "modules/**" | |
| - "main.nf" | |
| - "lib/**" | |
| - "conf/**" | |
| - "docker/modules/**" | |
| branches: | |
| - main | |
| - dev | |
| jobs: | |
| docker_get_genomes_for_mock: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v1 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v1 | |
| - name: Docker meta | |
| id: meta | |
| uses: docker/metadata-action@v3 | |
| with: | |
| images: jasonkwan/autometa-nf-modules-get_genomes_for_mock | |
| - name: Login to DockerHub | |
| if: github.event_name != 'pull_request' | |
| uses: docker/login-action@v1 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Autometa nextflow module get_genomes_for_mock docker build and push | |
| id: nextflow_get_genomes_for_mock_module_docker_build | |
| uses: docker/build-push-action@v2 | |
| with: | |
| context: . | |
| file: ./docker/modules/get_genomes_for_mock.Dockerfile | |
| push: ${{ github.event_name != 'pull_request' }} | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| - name: Image digest | |
| run: echo ${{ steps.docker_build.outputs.digest }} |