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Create AnalysisPlan067.sql (#143)
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* Create AnalysisPlan067.sql

* Create AP067.tsv

* Rename AP067.tsv to AP-067.tsv
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@jryurkanin
jryurkanin authored Dec 8, 2023
1 parent ef08406 commit 4363f65
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105 changes: 105 additions & 0 deletions hvtnFlow/plans/AP-067.tsv
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Analysis Plan Sort Analysis Plan Id NAME1 STAT1
AP-067 67 EXPERIMENT NAME EXPERIMENT NAME
AP-067 67 Sample Sample
AP-067 67 Sample Order Sample Order
AP-067 67 Time:Count Time:Count
AP-067 67 Time/S:Count Time/S:Count
AP-067 67 Time/S/L/CD19+/CD20+/CD27+CD21+:Count Time/S/L/CD19+/CD20+/CD27+CD21+:Count
AP-067 67 Time/S/L/CD19+/CD20+/CD27+CD21-:Count Time/S/L/CD19+/CD20+/CD27+CD21-:Count
AP-067 67 Time/S/L/CD19+/CD20+/CD27-CD21+:Count Time/S/L/CD19+/CD20+/CD27-CD21+:Count
AP-067 67 Time/S/L/CD19+/CD20+/CD27-CD21-:Count Time/S/L/CD19+/CD20+/CD27-CD21-:Count
AP-067 67 Time/S/L/CD19+/CD20+/CD27+:Count Time/S/L/CD19+/CD20+/CD27+:Count
AP-067 67 Time/S/L/CD19+/CD20+/CD27+/RBD+S2P+:Count Time/S/L/CD19+/CD20+/CD27+/RBD+S2P+:Count
AP-067 67 Time/S/L/CD19+/CD20+/CD27+/S2P++:Count Time/S/L/CD19+/CD20+/CD27+/S2P++:Count
AP-067 67 Time/S/L/CD19+/CD20+/CD27+/S2P++/RBD+:Count Time/S/L/CD19+/CD20+/CD27+/S2P++/RBD+:Count
AP-067 67 Time/S/L/CD19+/CD20+/CD27+/S2P++/RBD-:Count Time/S/L/CD19+/CD20+/CD27+/S2P++/RBD-:Count
AP-067 67 Time/S/L/CD19+/CD20- CD38+/CD27+ CD38+:Count Time/S/L/CD19+/CD20- CD38+/CD27+ CD38+:Count
AP-067 67 Time/S/L/CD19+/CD20- CD38+/CD27+ CD38+/IgG+:Count Time/S/L/CD19+/CD20- CD38+/CD27+ CD38+/IgG+:Count
AP-067 67 Time/S/L/CD19+/CD20- CD38+/CD27+ CD38+/IgG+/S2P++:Count Time/S/L/CD19+/CD20- CD38+/CD27+ CD38+/IgG+/S2P++:Count
AP-067 67 Time/S/L/CD19+/CD20- CD38+/CD27+ CD38+/IgG+/S2P++/RBD+:Count Time/S/L/CD19+/CD20- CD38+/CD27+ CD38+/IgG+/S2P++/RBD+:Count
AP-067 67 Time/S/L/CD19+/CD20- CD38+/CD27+ CD38+/IgG+/S2P++/RBD-:Count Time/S/L/CD19+/CD20- CD38+/CD27+ CD38+/IgG+/S2P++/RBD-:Count
AP-067 67 Time/S/L/CD19+/CD20- CD38+:Count Time/S/L/CD19+/CD20- CD38+:Count
AP-067 67 Time/S/L/CD19+/CD20- CD38+/RBD+S2P+:Count Time/S/L/CD19+/CD20- CD38+/RBD+S2P+:Count
AP-067 67 Time/S/L/CD19+/CD20- CD38+/S2P++:Count Time/S/L/CD19+/CD20- CD38+/S2P++:Count
AP-067 67 Time/S/L/CD19+/CD20- CD38+/S2P++/IgD+/CD27+:Count Time/S/L/CD19+/CD20- CD38+/S2P++/IgD+/CD27+:Count
AP-067 67 Time/S/L/CD19+/CD20- CD38+/S2P++/IgD+:Count Time/S/L/CD19+/CD20- CD38+/S2P++/IgD+:Count
AP-067 67 Time/S/L/CD19+/CD20- CD38+/S2P++/IgD-:Count Time/S/L/CD19+/CD20- CD38+/S2P++/IgD-:Count
AP-067 67 Time/S/L/CD19+/CD20- CD38+/S2P++/IgD-/IgA+:Count Time/S/L/CD19+/CD20- CD38+/S2P++/IgD-/IgA+:Count
AP-067 67 Time/S/L/CD19+/CD20- CD38+/S2P++/IgD+/IgD+IgG+:Count Time/S/L/CD19+/CD20- CD38+/S2P++/IgD+/IgD+IgG+:Count
AP-067 67 Time/S/L/CD19+/CD20- CD38+/S2P++/IgD-/IgD- IgM-:Count Time/S/L/CD19+/CD20- CD38+/S2P++/IgD-/IgD- IgM-:Count
AP-067 67 Time/S/L/CD19+/CD20- CD38+/S2P++/IgD-/IgG+/CD27+:Count Time/S/L/CD19+/CD20- CD38+/S2P++/IgD-/IgG+/CD27+:Count
AP-067 67 Time/S/L/CD19+/CD20- CD38+/S2P++/IgD-/IgG+:Count Time/S/L/CD19+/CD20- CD38+/S2P++/IgD-/IgG+:Count
AP-067 67 Time/S/L/CD19+/CD20- CD38+/S2P++/IgD+/IgM+:Count Time/S/L/CD19+/CD20- CD38+/S2P++/IgD+/IgM+:Count
AP-067 67 Time/S/L/CD19+/CD20- CD38+/S2P++/IgD-/IgM+:Count Time/S/L/CD19+/CD20- CD38+/S2P++/IgD-/IgM+:Count
AP-067 67 Time/S/L/CD19+/CD20- CD38+/S2P++/RBD+:Count Time/S/L/CD19+/CD20- CD38+/S2P++/RBD+:Count
AP-067 67 Time/S/L/CD19+/CD20- CD38+/S2P++/RBD-:Count Time/S/L/CD19+/CD20- CD38+/S2P++/RBD-:Count
AP-067 67 Time/S/L/CD19+/CD20+:Count Time/S/L/CD19+/CD20+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD+:Count Time/S/L/CD19+/CD20+/IgD+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-:Count Time/S/L/CD19+/CD20+/IgD-:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgA+:Count Time/S/L/CD19+/CD20+/IgD-/IgA+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgA+/RBD+S2P+:Count Time/S/L/CD19+/CD20+/IgD-/IgA+/RBD+S2P+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgA+/S2P++:Count Time/S/L/CD19+/CD20+/IgD-/IgA+/S2P++:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgA+/S2P++/RBD+:Count Time/S/L/CD19+/CD20+/IgD-/IgA+/S2P++/RBD+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgA+/S2P++/RBD-:Count Time/S/L/CD19+/CD20+/IgD-/IgA+/S2P++/RBD-:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD+/IgD+IgG+:Count Time/S/L/CD19+/CD20+/IgD+/IgD+IgG+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgD- IgM-:Count Time/S/L/CD19+/CD20+/IgD-/IgD- IgM-:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgD- IgM-/RBD+S2P+:Count Time/S/L/CD19+/CD20+/IgD-/IgD- IgM-/RBD+S2P+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgD- IgM-/S2P++:Count Time/S/L/CD19+/CD20+/IgD-/IgD- IgM-/S2P++:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgD- IgM-/S2P++/RBD+:Count Time/S/L/CD19+/CD20+/IgD-/IgD- IgM-/S2P++/RBD+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgD- IgM-/S2P++/RBD-:Count Time/S/L/CD19+/CD20+/IgD-/IgD- IgM-/S2P++/RBD-:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgG+/AF488+:Count Time/S/L/CD19+/CD20+/IgD-/IgG+/AF488+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgG+/AF647+:Count Time/S/L/CD19+/CD20+/IgD-/IgG+/AF647+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgG+/CD27+:Count Time/S/L/CD19+/CD20+/IgD-/IgG+/CD27+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgG+/CD27+/RBD+S2P+:Count Time/S/L/CD19+/CD20+/IgD-/IgG+/CD27+/RBD+S2P+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgG+/CD27+/S2P++:Count Time/S/L/CD19+/CD20+/IgD-/IgG+/CD27+/S2P++:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgG+/CD27+/S2P++/RBD+:Count Time/S/L/CD19+/CD20+/IgD-/IgG+/CD27+/S2P++/RBD+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgG+/CD27+/S2P++/RBD-:Count Time/S/L/CD19+/CD20+/IgD-/IgG+/CD27+/S2P++/RBD-:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgG+:Count Time/S/L/CD19+/CD20+/IgD-/IgG+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgG+/PE+:Count Time/S/L/CD19+/CD20+/IgD-/IgG+/PE+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgG+/RBD+S2P+:Count Time/S/L/CD19+/CD20+/IgD-/IgG+/RBD+S2P+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgG+/S2P++:Count Time/S/L/CD19+/CD20+/IgD-/IgG+/S2P++:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgG+/S2P++/RBD+:Count Time/S/L/CD19+/CD20+/IgD-/IgG+/S2P++/RBD+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgG+/S2P++/RBD-:Count Time/S/L/CD19+/CD20+/IgD-/IgG+/S2P++/RBD-:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD+/IgM+:Count Time/S/L/CD19+/CD20+/IgD+/IgM+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgM+:Count Time/S/L/CD19+/CD20+/IgD-/IgM+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD+/IgM+/RBD+S2P+:Count Time/S/L/CD19+/CD20+/IgD+/IgM+/RBD+S2P+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgM+/RBD+S2P+:Count Time/S/L/CD19+/CD20+/IgD-/IgM+/RBD+S2P+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD+/IgM+/S2P++:Count Time/S/L/CD19+/CD20+/IgD+/IgM+/S2P++:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgM+/S2P++:Count Time/S/L/CD19+/CD20+/IgD-/IgM+/S2P++:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD+/IgM+/S2P++/RBD+:Count Time/S/L/CD19+/CD20+/IgD+/IgM+/S2P++/RBD+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD+/IgM+/S2P++/RBD-:Count Time/S/L/CD19+/CD20+/IgD+/IgM+/S2P++/RBD-:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgM+/S2P++/RBD+:Count Time/S/L/CD19+/CD20+/IgD-/IgM+/S2P++/RBD+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/IgM+/S2P++/RBD-:Count Time/S/L/CD19+/CD20+/IgD-/IgM+/S2P++/RBD-:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/RBD+S2P+:Count Time/S/L/CD19+/CD20+/IgD-/RBD+S2P+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/S2P++:Count Time/S/L/CD19+/CD20+/IgD-/S2P++:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/S2P++/RBD+:Count Time/S/L/CD19+/CD20+/IgD-/S2P++/RBD+:Count
AP-067 67 Time/S/L/CD19+/CD20+/IgD-/S2P++/RBD-:Count Time/S/L/CD19+/CD20+/IgD-/S2P++/RBD-:Count
AP-067 67 Time/S/L/CD19+/CD20+/RBD+S2P+:Count Time/S/L/CD19+/CD20+/RBD+S2P+:Count
AP-067 67 Time/S/L/CD19+/CD20+/S2P++/CD27+CD21+:Count Time/S/L/CD19+/CD20+/S2P++/CD27+CD21+:Count
AP-067 67 Time/S/L/CD19+/CD20+/S2P++/CD27+CD21-:Count Time/S/L/CD19+/CD20+/S2P++/CD27+CD21-:Count
AP-067 67 Time/S/L/CD19+/CD20+/S2P++/CD27-CD21+:Count Time/S/L/CD19+/CD20+/S2P++/CD27-CD21+:Count
AP-067 67 Time/S/L/CD19+/CD20+/S2P++/CD27-CD21-:Count Time/S/L/CD19+/CD20+/S2P++/CD27-CD21-:Count
AP-067 67 Time/S/L/CD19+/CD20+/S2P++:Count Time/S/L/CD19+/CD20+/S2P++:Count
AP-067 67 Time/S/L/CD19+/CD20+/S2P++/IgD+/CD27+:Count Time/S/L/CD19+/CD20+/S2P++/IgD+/CD27+:Count
AP-067 67 Time/S/L/CD19+/CD20+/S2P++/IgD+:Count Time/S/L/CD19+/CD20+/S2P++/IgD+:Count
AP-067 67 Time/S/L/CD19+/CD20+/S2P++/IgD-:Count Time/S/L/CD19+/CD20+/S2P++/IgD-:Count
AP-067 67 Time/S/L/CD19+/CD20+/S2P++/IgD-/IgA+:Count Time/S/L/CD19+/CD20+/S2P++/IgD-/IgA+:Count
AP-067 67 Time/S/L/CD19+/CD20+/S2P++/IgD+/IgD+IgG+:Count Time/S/L/CD19+/CD20+/S2P++/IgD+/IgD+IgG+:Count
AP-067 67 Time/S/L/CD19+/CD20+/S2P++/IgD-/IgD- IgM-:Count Time/S/L/CD19+/CD20+/S2P++/IgD-/IgD- IgM-:Count
AP-067 67 Time/S/L/CD19+/CD20+/S2P++/IgD-/IgG+/CD27+:Count Time/S/L/CD19+/CD20+/S2P++/IgD-/IgG+/CD27+:Count
AP-067 67 Time/S/L/CD19+/CD20+/S2P++/IgD-/IgG+:Count Time/S/L/CD19+/CD20+/S2P++/IgD-/IgG+:Count
AP-067 67 Time/S/L/CD19+/CD20+/S2P++/IgD+/IgM+:Count Time/S/L/CD19+/CD20+/S2P++/IgD+/IgM+:Count
AP-067 67 Time/S/L/CD19+/CD20+/S2P++/IgD-/IgM+:Count Time/S/L/CD19+/CD20+/S2P++/IgD-/IgM+:Count
AP-067 67 Time/S/L/CD19+/CD20+/S2P++/RBD+:Count Time/S/L/CD19+/CD20+/S2P++/RBD+:Count
AP-067 67 Time/S/L/CD19+/CD20+/S2P++/RBD-:Count Time/S/L/CD19+/CD20+/S2P++/RBD-:Count
AP-067 67 Time/S/L/CD19+/CD27+CD21+:Count Time/S/L/CD19+/CD27+CD21+:Count
AP-067 67 Time/S/L/CD19+/CD27+CD21-:Count Time/S/L/CD19+/CD27+CD21-:Count
AP-067 67 Time/S/L/CD19+/CD27-CD21+:Count Time/S/L/CD19+/CD27-CD21+:Count
AP-067 67 Time/S/L/CD19+/CD27-CD21-:Count Time/S/L/CD19+/CD27-CD21-:Count
AP-067 67 Time/S/L/CD19+/CD27+ CD38+:Count Time/S/L/CD19+/CD27+ CD38+:Count
AP-067 67 Time/S/L/CD19+/CD27+ CD38+/S2P++:Count Time/S/L/CD19+/CD27+ CD38+/S2P++:Count
AP-067 67 Time/S/L/CD19+/CD27+ CD38+/S2P++/RBD+:Count Time/S/L/CD19+/CD27+ CD38+/S2P++/RBD+:Count
AP-067 67 Time/S/L/CD19+/CD27+ CD38+/S2P++/RBD-:Count Time/S/L/CD19+/CD27+ CD38+/S2P++/RBD-:Count
AP-067 67 Time/S/L/CD19+:Count Time/S/L/CD19+:Count
AP-067 67 Time/S/L:Count Time/S/L:Count
AP-067 67 Ungated:Count Ungated:Count
69 changes: 69 additions & 0 deletions hvtnFlow/resources/queries/flow/AnalysisPlan067.sql
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/*
* Copyright (c) 2015 LabKey Corporation
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
SELECT
--A._sample.property.NETWORK as NETWORK,
A.NETWORK,
A.PROTOCOL,
A.LABID,
A.ASSAY,
A.ASSAY_METHOD,
A.ASSAYID,
A._well.Run AS FLOWJO_XML_FILENAME,
REPLACE(A._well.Name, '.fcs', '') AS FCS_FILENAME,
A.SPECROLE,
A.PTID,
A.SID,
A.GUSPEC,
--A._sample.property.PTIDTYPE as PTIDTYPE,
A.PTIDTYPE,
A.SPECTYPE,
A.ISOLATION,
A.ADDITIVE,
A.CRYOSTAT,
A.CTRSAMPNAME,
A.STDY_DESC,
A.VISITNO,
A.DRAWDT,
A.TESTDT,
A.PLATE,
A.SAMP_ORD,
A.WELL_ID,
A.WELLROLE,
A.ANTIGEN,
NULL AS ANTIGENID,
A.NREPL,
A.ANALYSIS_PLAN_ID,
A.EXP_ASSAY_ID,
A.COLLECTCT,
A.SUBSET1 AS SUBSET,
A.SUBSET1_NUM AS SUBSET_NUM,

A.NUMVIALS,
A.RUNGROUPID AS GUAVA_MUSE_ID,
A.VIABL1,
A.RECOVR1,
A.VIABL2,
A.RECOVR2,
A.METHOD AS COUNT_METHOD,
A.REPLACE,
A.MODDT,
A.RUNNUM,
A.RELIABLE,
A.COMMENTS,
A._well @hidden, A._fcsfile @hidden, A._sample @hidden

FROM AnalysisPlanTemplate A
WHERE A.ANALYSIS_PLAN_ID = '67'

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