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Classification metrics overhaul: stat scores (3/n) #4839

Merged
merged 175 commits into from
Dec 30, 2020
Merged

Classification metrics overhaul: stat scores (3/n) #4839

merged 175 commits into from
Dec 30, 2020

Commits on Nov 24, 2020

  1. Add stuff

    @tadejsv
    tadejsv committed Nov 24, 2020
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  2. Change metrics documentation layout

    @tadejsv
    tadejsv committed Nov 24, 2020
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  3. Add stuff

    @tadejsv
    tadejsv committed Nov 24, 2020
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  4. Add stat scores

    @tadejsv
    tadejsv committed Nov 24, 2020
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  5. Change testing utils

    @tadejsv
    tadejsv committed Nov 24, 2020
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  6. Merge branch 'cls_metrics_input_formatting' into cls_metrics_accuracy

    @tadejsv
    tadejsv committed Nov 24, 2020
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  7. Merge branch 'cls_metrics_input_formatting' into cls_metrics_stat_scores

    @tadejsv
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  8. Replace len(*.shape) with *.ndim

    @tadejsv
    tadejsv committed Nov 24, 2020
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  9. More descriptive error message for input formatting

    @tadejsv
    tadejsv committed Nov 24, 2020
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  10. Replace movedim with permute

    @tadejsv
    tadejsv committed Nov 24, 2020
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  11. Merge branch 'cls_metrics_input_formatting' into cls_metrics_accuracy

    @tadejsv
    tadejsv committed Nov 24, 2020
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  12. Merge branch 'cls_metrics_input_formatting' into cls_metrics_stat_scores

    @tadejsv
    tadejsv committed Nov 24, 2020
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  13. PEP 8 compliance

    @tadejsv
    tadejsv committed Nov 24, 2020
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  14. WIP

    @tadejsv
    tadejsv committed Nov 24, 2020
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  15. Add reduce_scores function

    @tadejsv
    tadejsv committed Nov 24, 2020
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  16. Merge branch 'cls_metrics_accuracy' into cls_metrics_stat_scores

    @tadejsv
    tadejsv committed Nov 24, 2020
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  17. Temporarily add back legacy class_reduce

    @tadejsv
    tadejsv committed Nov 24, 2020
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  18. Merge branch 'cls_metrics_stat_scores' into cls_metrics_precision_recall

    @tadejsv
    tadejsv committed Nov 24, 2020
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  19. Division with float

    @tadejsv
    tadejsv committed Nov 24, 2020
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  20. Merge branch 'cls_metrics_accuracy' into cls_metrics_stat_scores

    @tadejsv
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  21. Merge branch 'cls_metrics_stat_scores' into cls_metrics_precision_recall

    @tadejsv
    tadejsv committed Nov 24, 2020
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  22. PEP 8 compliance

    @tadejsv
    tadejsv committed Nov 24, 2020
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  23. Merge branch 'cls_metrics_stat_scores' into cls_metrics_precision_recall

    @tadejsv
    tadejsv committed Nov 24, 2020
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  24. Remove precision recall

    @tadejsv
    tadejsv committed Nov 24, 2020
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  25. Replace movedim with permute

    @tadejsv
    tadejsv committed Nov 24, 2020
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  26. Add back tests

    @tadejsv
    tadejsv committed Nov 24, 2020
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Commits on Nov 25, 2020

  1. Add empty newlines

    @tadejsv
    tadejsv committed Nov 25, 2020
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  2. Add empty line

    @tadejsv
    tadejsv committed Nov 25, 2020
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  3. Fix permute

    @tadejsv
    tadejsv committed Nov 25, 2020
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  4. Fix some issues with old versions of PyTorch

    @tadejsv
    tadejsv committed Nov 25, 2020
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  5. Style changes in error messages

    @tadejsv
    tadejsv committed Nov 25, 2020
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  6. More error message style improvements

    @tadejsv
    tadejsv committed Nov 25, 2020
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  7. Fix typo in docs

    @tadejsv
    tadejsv committed Nov 25, 2020
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  8. Add more descriptive variable names in utils

    @tadejsv
    tadejsv committed Nov 25, 2020
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  9. Change internal var names

    @tadejsv
    tadejsv committed Nov 25, 2020
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  10. Merge remote-tracking branch 'upstream/master' into cls_metrics_input… 

    …_formatting
    @tadejsv
    tadejsv committed Nov 25, 2020
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  11. Merge branch 'cls_metrics_input_formatting' into cls_metrics_accuracy

    @tadejsv
    tadejsv committed Nov 25, 2020
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  12. Merge branch 'cls_metrics_accuracy' into cls_metrics_stat_scores

    @tadejsv
    tadejsv committed Nov 25, 2020
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  13. Break down error checking for inputs into separate functions

    @tadejsv
    tadejsv committed Nov 25, 2020
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  14. Remove the (N, ..., C) option in MD-MC

    @tadejsv
    tadejsv committed Nov 25, 2020
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  15. Simplify select_topk

    @tadejsv
    tadejsv committed Nov 25, 2020
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  16. Remove detach for inputs

    @tadejsv
    tadejsv committed Nov 25, 2020
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  17. Merge branch 'cls_metrics_input_formatting' into cls_metrics_accuracy

    @tadejsv
    tadejsv committed Nov 25, 2020
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  18. Fix typos

    @tadejsv
    tadejsv committed Nov 25, 2020
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  19. Merge branch 'cls_metrics_input_formatting' into cls_metrics_accuracy

    @tadejsv
    tadejsv committed Nov 25, 2020
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  20. Merge branch 'master' into cls_metrics_input_formatting

    @teddykoker
    teddykoker committed Nov 25, 2020
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  21. Merge branch 'cls_metrics_input_formatting' into cls_metrics_accuracy

    @tadejsv
    tadejsv committed Nov 25, 2020
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Commits on Nov 26, 2020

  1. Update pytorch_lightning/metrics/classification/utils.py 

    Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com>
    @tadejsv @Borda
    tadejsv and Borda committed Nov 26, 2020
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  2. Update docs/source/metrics.rst 

    Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com>
    @tadejsv @Borda
    tadejsv and Borda committed Nov 26, 2020
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  3. Minor error message changes

    @tadejsv
    tadejsv committed Nov 26, 2020
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  4. Update pytorch_lightning/metrics/utils.py 

    Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com>
    @tadejsv @Borda
    tadejsv and Borda committed Nov 26, 2020
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  5. Reuse case from validation in formatting

    @tadejsv
    tadejsv committed Nov 26, 2020
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  6. Merge branch 'cls_metrics_input_formatting' of github.com:tadejsv/pyt… 

    …orch-lightning into cls_metrics_input_formatting
    @tadejsv
    tadejsv committed Nov 26, 2020
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Commits on Nov 27, 2020

  1. Refactor code in _input_format_classification

    @tadejsv
    tadejsv committed Nov 27, 2020
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  2. Merge branch 'master' into cls_metrics_input_formatting

    @tchaton
    tchaton committed Nov 27, 2020
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  3. Small improvements

    @tadejsv
    tadejsv committed Nov 27, 2020
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  4. Merge branch 'cls_metrics_input_formatting' into cls_metrics_accuracy

    @tadejsv
    tadejsv committed Nov 27, 2020
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  5. PEP 8

    @tadejsv
    tadejsv committed Nov 27, 2020
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  6. Update pytorch_lightning/metrics/classification/utils.py 

    Co-authored-by: Rohit Gupta <rohitgr1998@gmail.com>
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    tadejsv and rohitgr7 committed Nov 27, 2020
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  7. Update pytorch_lightning/metrics/classification/utils.py 

    Co-authored-by: Rohit Gupta <rohitgr1998@gmail.com>
    @tadejsv @rohitgr7
    tadejsv and rohitgr7 committed Nov 27, 2020
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  8. Update docs/source/metrics.rst 

    Co-authored-by: Rohit Gupta <rohitgr1998@gmail.com>
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    tadejsv and rohitgr7 committed Nov 27, 2020
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  9. Update pytorch_lightning/metrics/classification/utils.py 

    Co-authored-by: Rohit Gupta <rohitgr1998@gmail.com>
    @tadejsv @rohitgr7
    tadejsv and rohitgr7 committed Nov 27, 2020
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  10. Apply suggestions from code review 

    Co-authored-by: Rohit Gupta <rohitgr1998@gmail.com>
    @tadejsv @rohitgr7
    tadejsv and rohitgr7 committed Nov 27, 2020
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  11. Alphabetical reordering of regression metrics

    @tadejsv
    tadejsv committed Nov 27, 2020
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  12. Merge branch 'cls_metrics_input_formatting' of github.com:tadejsv/pyt… 

    …orch-lightning into cls_metrics_input_formatting
    @tadejsv
    tadejsv committed Nov 27, 2020
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  13. Merge branch 'master' into cls_metrics_input_formatting

    @Borda
    Borda committed Nov 27, 2020
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Commits on Nov 28, 2020

  1. Change default value of top_k and add error checking

    @tadejsv
    tadejsv committed Nov 28, 2020
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  2. Merge branch 'cls_metrics_input_formatting' of github.com:tadejsv/pyt… 

    …orch-lightning into cls_metrics_input_formatting
    @tadejsv
    tadejsv committed Nov 28, 2020
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  3. Extract basic validation into separate function

    @tadejsv
    tadejsv committed Nov 28, 2020
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  4. Merge branch 'cls_metrics_input_formatting' into cls_metrics_accuracy

    @tadejsv
    tadejsv committed Nov 28, 2020
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  5. Update to new top_k default

    @tadejsv
    tadejsv committed Nov 28, 2020
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Commits on Nov 29, 2020

  1. Update desciption of parameters in input formatting

    @tadejsv
    tadejsv committed Nov 29, 2020
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Commits on Nov 30, 2020

  1. Merge branch 'master' into cls_metrics_input_formatting

    @tchaton
    tchaton committed Nov 30, 2020
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  2. Apply suggestions from code review 

    Co-authored-by: Nicki Skafte <skaftenicki@gmail.com>
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    tadejsv and SkafteNicki committed Nov 30, 2020
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  3. Check that probabilities in preds sum to 1 (for MC)

    @tadejsv
    tadejsv committed Nov 30, 2020
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  4. Fix coverage

    @tadejsv
    tadejsv committed Nov 30, 2020
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Commits on Dec 1, 2020

  1. Merge branch 'cls_metrics_input_formatting' into cls_metrics_accuracy

    @tadejsv
    tadejsv committed Dec 1, 2020
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  2. Split accuracy and hamming loss

    @tadejsv
    tadejsv committed Dec 1, 2020
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  3. Remove old redundant accuracy

    @tadejsv
    tadejsv committed Dec 1, 2020
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Commits on Dec 2, 2020

  1. Merge branch 'master' into cls_metrics_input_formatting

    @teddykoker
    teddykoker committed Dec 2, 2020
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Commits on Dec 3, 2020

  1. Merge branch 'master' into cls_metrics_stat_scores

    @tchaton
    tchaton committed Dec 3, 2020
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  2. Merge branch 'master' into cls_metrics_accuracy

    @tchaton
    tchaton committed Dec 3, 2020
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  3. Merge branch 'master' into cls_metrics_input_formatting

    @tchaton
    tchaton committed Dec 3, 2020
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Commits on Dec 6, 2020

  1. Merge with master and resolve conflicts

    @tadejsv
    tadejsv committed Dec 6, 2020
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  2. Merge branch 'master' into cls_metrics_input_formatting

    @Borda
    Borda committed Dec 6, 2020
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  3. Minor changes

    @tadejsv
    tadejsv committed Dec 6, 2020
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  4. Merge branch 'cls_metrics_input_formatting' of github.com:tadejsv/pyt… 

    …orch-lightning into cls_metrics_input_formatting
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  5. Merge branch 'cls_metrics_input_formatting' into cls_metrics_accuracy

    @tadejsv
    tadejsv committed Dec 6, 2020
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  6. Fix imports

    @tadejsv
    tadejsv committed Dec 6, 2020
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  7. Improve docstring descriptions

    @tadejsv
    tadejsv committed Dec 6, 2020
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  8. Merge branch 'cls_metrics_accuracy' into cls_metrics_stat_scores

    @tadejsv
    tadejsv committed Dec 6, 2020
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  9. Fix imports

    @tadejsv
    tadejsv committed Dec 6, 2020
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  10. Fix edge case and simplify testing

    @tadejsv
    tadejsv committed Dec 6, 2020
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  11. Merge branch 'cls_metrics_input_formatting' into cls_metrics_accuracy

    @tadejsv
    tadejsv committed Dec 6, 2020
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  12. Merge branch 'cls_metrics_accuracy' into cls_metrics_stat_scores

    @tadejsv
    tadejsv committed Dec 6, 2020
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  13. Fix docs

    @tadejsv
    tadejsv committed Dec 6, 2020
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  14. PEP8

    @tadejsv
    tadejsv committed Dec 6, 2020
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  15. Reorder imports

    @tadejsv
    tadejsv committed Dec 6, 2020
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  16. Merge branch 'cls_metrics_accuracy' into cls_metrics_stat_scores

    @tadejsv
    tadejsv committed Dec 6, 2020
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  17. Add top_k parameter

    @tadejsv
    tadejsv committed Dec 6, 2020
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Commits on Dec 7, 2020

  1. Merge remote-tracking branch 'upstream/master' into cls_metrics_accuracy

    @tadejsv
    tadejsv committed Dec 7, 2020
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  2. Update changelog

    @tadejsv
    tadejsv committed Dec 7, 2020
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  3. Update docstring

    @tadejsv
    tadejsv committed Dec 7, 2020
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  4. Merge branch 'master' into cls_metrics_accuracy

    @tadejsv
    tadejsv committed Dec 7, 2020
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  5. Update docstring

    @tadejsv
    tadejsv committed Dec 7, 2020
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  6. Merge branch 'cls_metrics_accuracy' of github.com:tadejsv/pytorch-lig… 

    …htning into cls_metrics_accuracy
    @tadejsv
    tadejsv committed Dec 7, 2020
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  7. Reverse formatting changes for tests

    @tadejsv
    tadejsv committed Dec 7, 2020
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  8. Change parameter order

    @tadejsv
    tadejsv committed Dec 7, 2020
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  9. Remove formatting changes 2/2

    @tadejsv
    tadejsv committed Dec 7, 2020
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  10. Remove formatting 3/3

    @tadejsv
    tadejsv committed Dec 7, 2020
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  11. .

    @tadejsv
    tadejsv committed Dec 7, 2020
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  12. Improve description of top_k parameter

    @tadejsv
    tadejsv committed Dec 7, 2020
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  13. Merge branch 'cls_metrics_accuracy' into cls_metrics_stat_scores

    @tadejsv
    tadejsv committed Dec 7, 2020
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  14. Apply suggestions from code review

    @Borda
    Borda committed Dec 7, 2020
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  15. Apply suggestions from code review 

    Co-authored-by: Rohit Gupta <rohitgr1998@gmail.com>
    @tadejsv @rohitgr7
    tadejsv and rohitgr7 committed Dec 7, 2020
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  16. Remove unneeded assert

    @tadejsv
    tadejsv committed Dec 7, 2020
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  17. Update pytorch_lightning/metrics/functional/accuracy.py 

    Co-authored-by: Rohit Gupta <rohitgr1998@gmail.com>
    @tadejsv @rohitgr7
    tadejsv and rohitgr7 committed Dec 7, 2020
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  18. Remove unneeded assert

    @tadejsv
    tadejsv committed Dec 7, 2020
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  19. Merge branch 'cls_metrics_accuracy' of github.com:tadejsv/pytorch-lig… 

    …htning into cls_metrics_accuracy
    @tadejsv
    tadejsv committed Dec 7, 2020
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  20. Explicit checking of parameter values

    @tadejsv
    tadejsv committed Dec 7, 2020
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  21. Apply suggestions from code review 

    Co-authored-by: Nicki Skafte <skaftenicki@gmail.com>
    @Borda @SkafteNicki
    Borda and SkafteNicki committed Dec 7, 2020
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  22. Apply suggestions from code review

    @tadejsv
    tadejsv committed Dec 7, 2020
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  23. Fix top_k checking

    @tadejsv
    tadejsv committed Dec 7, 2020
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  24. PEP8

    @tadejsv
    tadejsv committed Dec 7, 2020
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Commits on Dec 8, 2020

  1. Don't check dist_sync in test

    @tadejsv
    tadejsv committed Dec 8, 2020
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  2. add back check_dist_sync_on_step

    @tadejsv
    tadejsv committed Dec 8, 2020
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  3. Make sure half-precision inputs are transformed (#5013)

    @tadejsv
    tadejsv committed Dec 8, 2020
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  4. Fix typo

    @tadejsv
    tadejsv committed Dec 8, 2020
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  5. Rename hamming loss to hamming distance

    @tadejsv
    tadejsv committed Dec 8, 2020
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  6. Fix tests for half precision

    @tadejsv
    tadejsv committed Dec 8, 2020
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  7. Fix docs underline length

    @tadejsv
    tadejsv committed Dec 8, 2020
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  8. Fix doc undeline length

    @tadejsv
    tadejsv committed Dec 8, 2020
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  9. Merge branch 'master' into cls_metrics_accuracy

    @justusschock
    justusschock committed Dec 8, 2020
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  10. Replace mdmc_accuracy parameter with subset_accuracy

    @tadejsv
    tadejsv committed Dec 8, 2020
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  11. Merge branch 'cls_metrics_accuracy' of github.com:tadejsv/pytorch-lig… 

    …htning into cls_metrics_accuracy
    @tadejsv
    tadejsv committed Dec 8, 2020
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  12. Update changelog

    @tadejsv
    tadejsv committed Dec 8, 2020
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  13. Merge branch 'cls_metrics_accuracy' into cls_metrics_stat_scores

    @tadejsv
    tadejsv committed Dec 8, 2020
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Commits on Dec 21, 2020

  1. Merge remote-tracking branch 'upstream/release/1.2-dev' into cls_metr… 

    …ics_stat_scores
    @tadejsv
    tadejsv committed Dec 21, 2020
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  2. Fix unwanted accuracy change

    @tadejsv
    tadejsv committed Dec 21, 2020
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  3. Enable top_k for ML prob inputs

    @tadejsv
    tadejsv committed Dec 21, 2020
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  4. Test that default threshold is 0.5

    @tadejsv
    tadejsv committed Dec 21, 2020
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  5. Fix typo

    @tadejsv
    tadejsv committed Dec 21, 2020
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Commits on Dec 23, 2020

  1. Update top_k description in helpers

    @tadejsv
    tadejsv committed Dec 23, 2020
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  2. Merge remote-tracking branch 'upstream/release/1.2-dev' into cls_metr… 

    …ics_stat_scores
    @tadejsv
    tadejsv committed Dec 23, 2020
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  3. updates

    @tadejsv
    tadejsv committed Dec 23, 2020
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  4. Update styling and add back tests

    @tadejsv
    tadejsv committed Dec 23, 2020
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  5. Remove excess spaces

    @tadejsv
    tadejsv committed Dec 23, 2020
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  6. fix torch.where for old versions

    @tadejsv
    tadejsv committed Dec 23, 2020
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  7. fix linting

    @tadejsv
    tadejsv committed Dec 23, 2020
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  8. Update docstring

    @tadejsv
    tadejsv committed Dec 23, 2020
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  9. Fix docstring

    @tadejsv
    tadejsv committed Dec 23, 2020
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Commits on Dec 24, 2020

  1. Apply suggestions from code review (mostly docs)

    @tadejsv
    tadejsv committed Dec 24, 2020
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  2. Default threshold to None, accept only (0,1)

    @tadejsv
    tadejsv committed Dec 24, 2020
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  3. Change wrong threshold message

    @tadejsv
    tadejsv committed Dec 24, 2020
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Commits on Dec 25, 2020

  1. Improve documentation and add tests

    @tadejsv
    tadejsv committed Dec 25, 2020
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  2. Merge branch 'tests_mprc' into cls_metrics_stat_scores

    @tadejsv
    tadejsv committed Dec 25, 2020
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Commits on Dec 27, 2020

  1. Add back ddp tests

    @tadejsv
    tadejsv committed Dec 27, 2020
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  2. Change stat reduce method and default

    @tadejsv
    tadejsv committed Dec 27, 2020
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Commits on Dec 28, 2020

  1. Remove DDP tests and fix doctests

    @tadejsv
    tadejsv committed Dec 28, 2020
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  2. Fix doctest

    @tadejsv
    tadejsv committed Dec 28, 2020
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  3. Update changelog

    @tadejsv
    tadejsv committed Dec 28, 2020
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  4. Refactoring

    @tadejsv
    tadejsv committed Dec 28, 2020
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  5. Fix typo

    @tadejsv
    tadejsv committed Dec 28, 2020
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  6. Refactor

    @tadejsv
    tadejsv committed Dec 28, 2020
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  7. Increase coverage

    @tadejsv
    tadejsv committed Dec 28, 2020
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  8. Fix linting

    @tadejsv
    tadejsv committed Dec 28, 2020
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Commits on Dec 29, 2020

  1. Consistent use of backticks

    @tadejsv
    tadejsv committed Dec 29, 2020
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  2. Merge remote-tracking branch 'upstream/release/1.2-dev' into cls_metr… 

    …ics_stat_scores
    @tadejsv
    tadejsv committed Dec 29, 2020
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  3. Fix too long line in docs

    @tadejsv
    tadejsv committed Dec 29, 2020
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  4. Apply suggestions from code review

    @tadejsv
    tadejsv committed Dec 29, 2020
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  5. Fix deprecation test

    @tadejsv
    tadejsv committed Dec 29, 2020
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  6. Fix deprecation test

    @tadejsv
    tadejsv committed Dec 29, 2020
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  7. Default threshold back to 0.5

    @tadejsv
    tadejsv committed Dec 29, 2020
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Commits on Dec 30, 2020

  1. Minor documentation fixes

    @tadejsv
    tadejsv committed Dec 30, 2020
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  2. Add types to tests

    @tadejsv
    tadejsv committed Dec 30, 2020
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