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LinguaPhylo · Jan 18, 2024 · bd6b037 · bd6b037
1 parent 60132bd
commit bd6b037
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/lphy-studio/src/main/java/lphystudio/app/LinguaPhyloStudio.java b/lphy-studio/src/main/java/lphystudio/app/LinguaPhyloStudio.java
@@ -294,6 +294,8 @@ private void buildFileMenu(JMenu fileMenu) {
                     // retrieve all simulated alignments stored in the map
                     Map<Integer, List<Value>> valuesMap = panel.getValuesAllRepsMap();
 
+                    // TODO: Cannot specify to call which formatter in the core, as Nexus formatter is in the base,
+                    // so call ValueFileLoggerListener instead, however the alignment will be simulated again.
                     ValueFileLoggerListener fileLoggerListener = new ValueFileLoggerListener();
                     // set alignment directory
                     fileLoggerListener.setOutputDir(selectedDir.getAbsolutePath());