Contains the dataset, phylogenetic tree, and R code related to analyses for the following study:
Legendre, L. J., S. Choi, and J. A. Clarke. 2022. The diverse terminology of reptile eggshell microstructure and its effect on phylogenetic comparative analyses. Journal of Anatomy 241:641–666.
File description:
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'Eggshell_review_project.html': HTML tutorial for the code used in the paper (all references and a detailed description of the protocol can be found in the online Supplementary Information of the paper)
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'Eggshell_review_project.Rmd': original R script used to generate the HTML file, in Markdown format
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'Datawhole_newproject.txt': dataset in TXT format, containing egg measurements and scoring for all three scoring procedures for 208 species of reptiles (fully referenced version is included as Supplementary Table 1 in Legendre et al., 2022)
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'treewhole_newversion.trees.nex': phylogenetic tree for dataset, in NEXUS format