Skip to content

Open Diffusion Visualization for Everyone - BrainHack Vandy 2025

License

Notifications You must be signed in to change notification settings

MASILab/open_dive

Repository files navigation

OpenDIVE

OpenDIVE (Open Diffusion Imaging Visualization for Everyone) is a command line interface tool for generating accessible, interpretable visualizations from diffusion MRI, initiated at BrainHack Vandy 2025.

Despite the prolific availability of software tools to visualize diffusion MRI data, there is no standardized visualization to summarize longitudinal changes. Similarly, the current standard of visualizations are not accessible to people with common forms of colorblindness. We propose a software package to both standardize and improve accessibility to representations of diffusion data.

Aim 1: We propose a colorblind-friendly colormap for diffusion MRI images.

Aim 2: We generate a standardized display for anatomical images to overlay the diffusion models based on user input, including support for multiple track files, color maps, and illustration of bundle summary metrics (p-value, volume, effect size, etc.) per bundle.

For FAQs related to diffusion MRI, see our diffusion FAQ issue (#4).

Installation

You can install the package using Python:

pip install git+https://github.com/MASILab/open_dive

Usage

After installing the package, you should be able to use the nifti2png command to produce images. To view your visualizations, use the --interactive flag. Please see the wiki for documentation on using the command.

Contributing

We welcome issues and pull requests! For details on contributing, please see CONTRIBUTING.md.

Contributors

License

MIT

About

Open Diffusion Visualization for Everyone - BrainHack Vandy 2025

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages