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@MGXlab

VEO & MGX Groups

Viral Ecology and Omics Group (VEO) & Metagenomics Group (MGX)

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  1. CAT_pack CAT_pack Public

    CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

    Python 198 31

  2. DNNGIOR DNNGIOR Public

    Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling

    Python 11 3

  3. Viromics-Workshop-MGX Viromics-Workshop-MGX Public

    Python 9 3

  4. social_niche_breadth_SNB social_niche_breadth_SNB Public

    Calculate the Social Niche Breadth (SNB) score of all taxonomic lineages in a set of microbiomes.

    Python 9 1

  5. Jaeger Jaeger Public

    Jaeger is a quick and precise tool for detecting phages in sequence assemblies.

    Python 7 1

  6. CAT_dev CAT_dev Public

    CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

    Python 5

Repositories

Showing 10 of 23 repositories
  • ICTV_TaxonomyChallenge_CAT Public

    CAT results for the ICTV taxonomy challenge

    MGXlab/ICTV_TaxonomyChallenge_CAT’s past year of commit activity
    Python 0 0 0 0 Updated Dec 21, 2024
  • features_pipeline Public

    This is a snakemake pipeline to extract features from bacterial genomes.

    MGXlab/features_pipeline’s past year of commit activity
    Python 1 1 0 0 Updated Dec 12, 2024
  • CAT_pack Public

    CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

    MGXlab/CAT_pack’s past year of commit activity
    Python 198 MIT 31 47 3 Updated Dec 3, 2024
  • DNNGIOR Public

    Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling

    MGXlab/DNNGIOR’s past year of commit activity
    Python 11 MIT 3 7 2 Updated Nov 29, 2024
  • viral_ecology_pipeline Public

    viral ecology along gradient across biomes

    MGXlab/viral_ecology_pipeline’s past year of commit activity
    Python 2 0 0 1 Updated Nov 23, 2024
  • Jaeger Public

    Jaeger is a quick and precise tool for detecting phages in sequence assemblies.

    MGXlab/Jaeger’s past year of commit activity
    Python 7 MIT 1 0 0 Updated Nov 15, 2024
  • genes_synteny Public

    This repository contains a tutorial and scripts to create a gene synteny and homology figure for a set of species.

    MGXlab/genes_synteny’s past year of commit activity
    Jupyter Notebook 3 0 0 0 Updated Nov 1, 2024
  • Viromics2024 Public
    MGXlab/Viromics2024’s past year of commit activity
    HTML 1 1 0 0 Updated Oct 7, 2024
  • Graphite Public

    LMEMs in compacted colored De Bruijn graphs

    MGXlab/Graphite’s past year of commit activity
    C 4 3 0 0 Updated Aug 2, 2024
  • subgraphs Public
    MGXlab/subgraphs’s past year of commit activity
    Rust 1 0 0 0 Updated Jun 27, 2024
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