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CHANGELOG.md

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version 1.1.26


  • Added CHANGELOG.md
  • pypi version 1.1.26
  • Better error messages and handling
  • Easy installation via bioconda and pip
  • Significant speed improvements compared to 1.1.23
  • New prediction reliability estimation module
  • New prophage prediction mode (unstable)
  • New output fields
    1. entropy (Another measure of prediction confidence; lower the better)
    2. realiability_score (confidence in the predicion ; higher the better)
    3. host_contam (whether there are host like regions)
    4. prophage_contam (whether there are phage like regions)
    5. Bacteria_var (variance of Bacteria_score)
    6. Phage_var (variance of Phage_score)
    7. Eukarya_var (variance of Eukarya_score)
    8. Archaea_var (variance of Archaea_score)

version 1.1.23


  • Fixed a bug that prevented GPU utilization
  • Added support for manually setting the fragment size.
  • Fixed wrong version number

version 1.1.22


  • This release bring a python API to Jaeger enabling easy integration of Jaeger to python scripts and packages.