itkAlphaAMD is a registration framework (and distance measure) building on Insight Segmentation and Registration Toolkit. If you use this, please cite: https://doi.org/10.1109/TIP.2019.2899947

Author: Johan Öfverstedt

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Requirements/Dependencies:

ITK 5.01

CMake

Tested on Windows 10, MacOSX and Ubuntu 16.04 LTS.

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To build the framework (on Linux), go to the directory directly above the repository:

$ mkdir itkAlphaAMD-build/

$ cd itkAlphaAMD-build/

$ cmake -D CMAKE_BUILD_TYPE=Release ../itkAlphaAMD/source/

$ make

Now there will be a number of command line applications in the folder:

ACRegister - Registers pairs of images to a common space.

ACTransform - Warps images according to a given transformation, e.g. found by ACRegister.

ACTransformLandmarks - Transforms sets of landmarks given as a csv-file of coordinates according to a given transformation.

ACRandomTransfoms - Generates a set of image pairs subject to a specified class of transformations and noise level.

ACLabelOverlap - Computes the label overlap of label images.

FormatConv - Converts images between various formats.