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gaelforget committed May 21, 2024
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2 changes: 1 addition & 1 deletion docs/index.rst
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Expand Up @@ -16,7 +16,7 @@ arrays. This object-oriented approach allows users to
write generic, compact analysis codes that readily become applicable
to a wide variety of grids (e.g., those in :numref:`sphere_all`).
`gcmfaces` notably allows for analysis of MITgcm output on any of its
`familiar grids <ftp://mit.ecco-group.org/ecco_for_las/version_4/grids/>`__.
`familiar grids <https://engaging-web.mit.edu/~gforget/harbor/version_4/grids/>`__.
It was originally developed as part the `ECCO version 4` framework along with
the companion `MITprof` toolbox that handles unevenly
distributed in-situ ocean observations :cite:`for-eta:15`.
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4 changes: 2 additions & 2 deletions docs/prep_basic.rst
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Expand Up @@ -76,7 +76,7 @@ argument. :numref:`formats` and ``help grid_load;`` provide
additional information regarding, respectively, and supported file
formats and ``grid_load.m`` arguments. As an alternative to
``grid_load.m``, `MITgcm` input grid files can be read ``grid_load_native.m``
as shown `here <http://mit.ecco-group.org/opendap/ecco_for_las/version_4/grids/grids_input/>`__
as shown `here <https://engaging-web.mit.edu/~gforget/harbor/version_4/grids/grids_input/>`__
(see README and ``demo_grids.m``).

Both ``grid_load.m`` and ``grid_load_native.m`` store all C-grid variables
Expand Down Expand Up @@ -246,7 +246,7 @@ The provided I/O functions (``rdmds2gcmfaces.m`` and ``read_bin.m``) rely on
``convert2gcmfaces.m`` to convert `mds` output to `gcmfaces` objects on the fly.
The reverse conversion occurs when ``convert2gcmfaces.m`` is called with a `gcmfaces`
input argument. This approach provides a unified framework to analyze MITgcm output or
prepare MITgcm input for `all known grids <http://mit.ecco-group.org/opendap/ecco_for_las/version_4/grids/grids_output/contents.html>`__
prepare MITgcm input for `all known grids <https://engaging-web.mit.edu/~gforget/harbor/version_4/grids/grids_output/>`__
(see README and ``demo_grids.m``).

.. [1]
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11 changes: 5 additions & 6 deletions docs/prep_install.rst
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Expand Up @@ -30,17 +30,17 @@ Obtain Input Data
-----------------

The `gcmfaces` toolbox allows users to seamlessly deal with various gridding
approaches (e.g., all grids distributed via `this FTP server
<ftp://mit.ecco-group.org/ecco_for_las/version_4/grids/>`__)
approaches (e.g., all grids distributed via `this MIT server
<https://engaging-web.mit.edu/~gforget/harbor/version_4/grids>`__)
using compact and generic codes as explained in this user guide. Once a
grid has been loaded to memory (see below and :numref:`Cgrid`), `gcmfaces` can be used
to analyze ocean model solutions and state estimates on that grid
(:numref:`demo` and :numref:`standard`).


To get started in :numref:`getting_started` and :numref:`features`, it
suffices to download ``nctiles_grid/`` (145M) either from `this ftp
server <ftp://mit.ecco-group.org/ecco_for_las/version_4/release2/nctiles_grid/>`__
suffices to download ``nctiles_grid/`` (145M) either from `this MIT
server <https://engaging-web.mit.edu/~gforget/harbor/version_4/release2/nctiles_grid/>`__
or from `this permanent archive <http://dx.doi.org/10.7910/DVN/H8W5VW>`__.
:numref:`demo` and :numref:`standard` use ``nctiles_climatology/`` (10G)
to illustrate higher-level functionalities. One download method, from the
Expand All @@ -61,8 +61,7 @@ function calls as explained at the end of :numref:`standard`.

::

setenv FTPv4r2 'ftp://mit.ecco-group.org/ecco_for_las/version_4/release2/'
#export FTPv4r2='ftp://mit.ecco-group.org/ecco_for_las/version_4/release2/'
setenv FTPv4r2 'https://engaging-web.mit.edu/~gforget/harbor/version_4/release2'
wget --recursive {$FTPv4r2}/nctiles_grid
wget --recursive {$FTPv4r2}/nctiles_climatology
#wget --recursive {$FTPv4r2}/nctiles_monthly
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