MDC data updates #1186
Workflow file for this run
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| name: unit-tests | |
| on: | |
| pull_request: | |
| types: | |
| - opened | |
| - reopened | |
| - synchronize | |
| - ready_for_review | |
| push: | |
| branches: | |
| - main | |
| jobs: | |
| # first job users filters to output which libraries | |
| # and projects have updates that need testing | |
| changes: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| libraries: ${{ steps.filter.outputs.changes }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: dorny/paths-filter@v2 | |
| id: filter | |
| with: | |
| filters: .github/filters.yaml | |
| if: github.event.pull_request.draft == false | |
| # second job takes those outputs and runs | |
| # unit tests on these libs and projects | |
| tests: | |
| runs-on: ubuntu-latest | |
| needs: changes | |
| strategy: | |
| fail-fast: true # is this desired behavior here? | |
| matrix: | |
| library: ${{ fromJSON(needs.changes.outputs.libraries) }} | |
| # extra test flags for train project | |
| include: | |
| - library: 'projects/sandbox/train/' | |
| args: '-m "not gpu"' | |
| exclude: | |
| # don't run non-existent .github/workflow tests | |
| - library: 'workflow' | |
| permissions: | |
| packages: read | |
| container: | |
| image: ghcr.io/ml4gw/pinto:main | |
| credentials: | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.github_token }} | |
| volumes: | |
| - ${{ github.workspace }}:/github/workspace | |
| env: | |
| CONDA_PREFIX: /opt/conda | |
| CONDA_DEFAULT_ENV: base | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: recursive | |
| # install gcc for bilby build | |
| # TODO: not every library/project needs this | |
| - | |
| name: install gcc | |
| run: apt update && apt install -y build-essential | |
| # build the project's environment | |
| - | |
| name: build environment | |
| env: | |
| test_dir: /github/workspace/${{ matrix.library }} | |
| CONDA_PREFIX: /opt/conda | |
| # TODO: use case statement here, or add separate matrix.build_args | |
| run: | | |
| if [[ "${{ matrix.library }}" == "libs/architectures/" ]]; then | |
| FLAGS="-E wrapper" | |
| else | |
| FLAGS="" | |
| fi | |
| pinto -p $test_dir build $FLAGS | |
| shell: bash | |
| # run its unit tests inside that environment | |
| - | |
| name: run tests | |
| env: | |
| test_dir: /github/workspace/${{ matrix.library }} | |
| CONDA_PREFIX: /opt/conda | |
| run: | | |
| if [[ "${{ matrix.library }}" == "projects/sandbox/datagen/" ]]; then | |
| export LD_LIBRARY_PATH=/opt/conda/envs/aframe-datagen/lib/ | |
| fi | |
| pinto -p $test_dir run printenv | |
| pinto -p $test_dir run pytest $test_dir/tests ${{matrix.args}} | |
| shell: bash |