Allow factor sorting by R2 and renaming by enrichment significance #25
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| name: build | |
| on: | |
| push: | |
| branches: [master] | |
| pull_request: | |
| branches: [master] | |
| jobs: | |
| test: | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| os: [ "ubuntu-latest" ] | |
| python-version: [ "3.9", "3.10" ] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| #---------------------------------------------- | |
| # check-out repo and set-up python | |
| #---------------------------------------------- | |
| - name: Check out repository | |
| uses: actions/checkout@v3 | |
| - name: Set up python ${{ matrix.python-version }} | |
| id: setup-python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| #---------------------------------------------- | |
| # ----- install & configure poetry ----- | |
| #---------------------------------------------- | |
| - name: Install Poetry | |
| uses: snok/install-poetry@v1 | |
| with: | |
| virtualenvs-create: true | |
| virtualenvs-in-project: true | |
| #---------------------------------------------- | |
| # load cached venv if cache exists | |
| #---------------------------------------------- | |
| - name: Load cached venv | |
| id: cached-poetry-dependencies | |
| uses: actions/cache@v3 | |
| with: | |
| path: .venv | |
| key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} | |
| #---------------------------------------------- | |
| # install dependencies if cache does not exist | |
| #---------------------------------------------- | |
| - name: Install dependencies | |
| if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' | |
| run: poetry install --no-interaction --no-root | |
| #---------------------------------------------- | |
| # install your root project, if required | |
| #---------------------------------------------- | |
| - name: Install library | |
| run: poetry install --no-interaction | |
| #---------------------------------------------- | |
| # add matrix specifics and run test suite | |
| #---------------------------------------------- | |
| - name: Run tests | |
| run: | | |
| source $VENV | |
| pytest -v --cov-report xml:coverage.xml --cov=muvi --color=yes | |
| - name: Upload coverage | |
| uses: codecov/codecov-action@v3 |