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Merge pull request #68 from MPI-Dortmund/strategies
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thorstenwagner authored Nov 2, 2023
2 parents ff9fb81 + 1484e74 commit 2880d6c
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2 changes: 2 additions & 0 deletions docs/strategies/strategy_02.rst
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Expand Up @@ -26,6 +26,7 @@ How to use it
-------------

1. Estimate the mask
^^^^^^^^^^^^^^^^^^^^

To calculate the mask, all you need is your tomogram and the latest TomoTwin model:

Expand All @@ -34,6 +35,7 @@ To calculate the mask, all you need is your tomogram and the latest TomoTwin mod
CUDA_VISIBLE_DEVICES=0,1 tomotwin_tools.py embedding_mask median -i tomo/tomo.mrc -m tomotwin_latest.pth -o mask

2. Calculate the (filtered) embeddings
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

.. prompt:: bash $

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