Skip to content

Commit

Permalink
update tutorial
Browse files Browse the repository at this point in the history
  • Loading branch information
thorstenwagner committed Mar 6, 2024
1 parent e55aa7d commit b9fd783
Showing 1 changed file with 1 addition and 3 deletions.
4 changes: 1 addition & 3 deletions docs/tutorials/tut02_cluster.rst
Original file line number Diff line number Diff line change
Expand Up @@ -39,11 +39,9 @@ Now that we have all the input files for the clustering workflow we can get star

napari your_tomo_a10.mrc

Next open the napari-tomotwin clustering tool via :guilabel:`Plugins` -> :guilabel:`napari-tomotwin` -> :guilabel:`Cluster UMAP embeddings`. Then choose the :guilabel:`Path to UMAP` by clicking on :guilabel:`Select file` and provide the path to your :file:`your_tomo_a10_embeddings.tumap`.
Next open the napari-tomotwin clustering tool via :guilabel:`Plugins` -> :guilabel:`TomoTwin clustering workflow`. Then choose the :guilabel:`Path to UMAP` by clicking on :guilabel:`Select file` and provide the path to your :file:`your_tomo_a10_embeddings.tumap`.
Click :guilabel:`Load` and a 2D plot of the umap embeddings should appear in the plugin window. It will do some calculating in the background and might take a few seconds.

The other buttons :guilabel:`Recalculate UMAP for selected clusters` and :guilabel:`Show target embedding positions` will be described in the next section.

5. Find target cluster
----------------------

Expand Down

0 comments on commit b9fd783

Please sign in to comment.