Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

make headlines #68

Merged
merged 1 commit into from
Nov 2, 2023
Merged
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 2 additions & 0 deletions docs/strategies/strategy_02.rst
Original file line number Diff line number Diff line change
Expand Up @@ -26,6 +26,7 @@ How to use it
-------------

1. Estimate the mask
^^^^^^^^^^^^^^^^^^^^

To calculate the mask, all you need is your tomogram and the latest TomoTwin model:

Expand All @@ -34,6 +35,7 @@ To calculate the mask, all you need is your tomogram and the latest TomoTwin mod
CUDA_VISIBLE_DEVICES=0,1 tomotwin_tools.py embedding_mask median -i tomo/tomo.mrc -m tomotwin_latest.pth -o mask

2. Calculate the (filtered) embeddings
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

.. prompt:: bash $

Expand Down
Loading