runs on linux! prevent buffer overflow by

reducing the number of characters to copy into logstring

also increased the size of some buffers to try to prevent overflows and warnings.
still gives warnings...

src/src/io.c

@@ -991,7 +991,7 @@ void prepare_output_files(int seg)
  ***********************************************/
 
   logmsg("--t prepare_output_files_1 \n"," ",1);
-  char segnum[6];
+  char segnum[10];
 
   if (seg == 0)
   {

src/src/load.cpp

@@ -338,8 +338,8 @@ int load( char *file)
 int create_output_fn_dir(){
 	// concatenate "sim_results_" with the name of the supplement file:
 	//sprintf(output_file_name, "sim_results_%s", words[1]);
-	char buffer_output_dir [250];
-	char buffer_output_fn [250];
+	char buffer_output_dir [1024];
+	char buffer_output_fn [1024];
 	sprintf (buffer_output_dir, "sim_results_%s_%ld_%s/", rate_file_name, original_seed,result_suffix);
 	sprintf (buffer_output_fn, "%sresult", buffer_output_dir);
 
@@ -364,7 +364,7 @@ int create_output_fn_dir(){
 
 
 	// copy the .sup-file (rate_file_name) into the subfolder:
-	char buffer_sup_fn_dest [250];
+	char buffer_sup_fn_dest [1024];
 	sprintf (buffer_sup_fn_dest, "%s%s", buffer_output_dir, rate_file_name);
     FILE *source = fopen(rate_file_name, "rb");
     FILE *destination = fopen(buffer_sup_fn_dest, "wb");
@@ -2387,7 +2387,7 @@ specified for unmarried males THESE RATES WILL BE IGNORED.",1);
 		}
 		if (rates_test == 0)
 		{
-			char logstring[512];
+			// char logstring[512];
 			sprintf(logstring,
 					"   ***NO  DEATH RATES specified for  SINGLE %ss \n"
 					"   ***of ANY group This is unusual -- are you SURE you know \n"
@@ -2423,11 +2423,11 @@ specified for unmarried males THESE RATES WILL BE IGNORED.",1);
 							if (1)
 							{
 								sprintf(logstring,
-										"* - - - - - - - - - - - - - - - - - - - - - - \n"
+										"* \n\n"
 										"* group: %d event: %d, %s  sex:%d, %s mstatus:%d, %s,  \n"
 										"* upper age: %d  has rate with zero duration\n"
 										"* crnt->width: %d ; crnt->lambda: %7.4f\n  crnt->mu %7.4f, crnt->modified_lambda: %f"
-										"* - - - - - - - - - - - - - - - - - - - - - - ",
+										"* \n",
 										grp, event,index_to_event[event], sex, index_to_sex[sex], mstat,
 										index_to_mstatus[mstat], crnt->upper_age, crnt->width, 
 										crnt->lambda, crnt->mu,crnt->modified_lambda);

tests/testthat/test_futurecalls.R

@@ -3,7 +3,7 @@ library("rsocsim")
 
 # create a new folder for all the files related to a simulation.
 # this will be in your home- or user-directory:
-folder = "C:\\Users\\tom\\socsim\\socsim_sim_2186\\"#rsocsim::create_simulation_folder()
+folder = socsim::create_simulation_folder()
 
 # create a new supplement-file. Supplement-files tell socsim what
 # to simulate. create_sup_file will create a very basic supplement filee

tests/testthat/testit2.R

@@ -9,7 +9,7 @@ supfile
 
 seed = 47
 
-rsocsim::socsim(folder,supfile,seed,suffix="te/st1")#,process_method = "inprocess")
+rsocsim::socsim(folder,supfile,seed,suffix="test1")#,process_method = "inprocess")
 
 
 supfile = "CousinDiversity.sup"