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trying to fix codecov
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explodecomputer committed Mar 13, 2024
1 parent c0b13f7 commit 61ebe8b
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1 change: 1 addition & 0 deletions .Rbuildignore
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^\.Rproj\.user$
^cran-comments\.md$
^CRAN-SUBMISSION$
^codecov\.yml$
3 changes: 0 additions & 3 deletions .github/workflows/R-CMD-check.yaml
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Expand Up @@ -25,14 +25,11 @@ jobs:
- {os: macOS-latest, r: 'release'}

- {os: windows-latest, r: 'release'}
# Use 3.6 to trigger usage of RTools35
- {os: windows-latest, r: '3.6'}

# Use older ubuntu to maximise backward compatibility
- {os: ubuntu-18.04, r: 'devel', http-user-agent: 'release'}
- {os: ubuntu-18.04, r: 'release'}
- {os: ubuntu-18.04, r: 'oldrel-1'}
- {os: ubuntu-18.04, r: 'oldrel-2'}

env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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4 changes: 2 additions & 2 deletions DESCRIPTION
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Package: ieugwasr
Title: R Interface to the OpenGWAS Database API
Title: R Interface to the 'OpenGWAS' Database API
Version: 0.1.7
Authors@R: c(
person("Gibran", "Hemani", , "g.hemani@bristol.ac.uk", role = c("aut", "cre", "cph"),
Expand All @@ -11,7 +11,7 @@ Authors@R: c(
person("Rita", "Rasteiro", , "rita.rasteiro@bristol.ac.uk", role = "aut",
comment = c(ORCID = "0000-0002-4217-3060"))
)
Description: R interface to the OpenGWAS database API. Includes a wrapper
Description: R interface to the 'OpenGWAS' database API. Includes a wrapper
to make generic calls to the API, plus convenience functions for
specific queries.
License: MIT + file LICENSE
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2 changes: 1 addition & 1 deletion README.md
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[![Lifecycle:
experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
[![R build status](https://github.com/MRCIEU/ieugwasr/workflows/R-CMD-check/badge.svg)](https://github.com/MRCIEU/ieugwasr/actions)
[![codecov](https://codecov.io/github/mrcieu/ieugwasr/branch/master/graphs/badge.svg)](https://codecov.io/github/mrcieu/ieugwasr)
[![Codecov test coverage](https://codecov.io/gh/MRCIEU/ieugwasr/branch/master/graph/badge.svg)](https://app.codecov.io/gh/MRCIEU/ieugwasr?branch=master)
<!-- badges: end -->

The [IEU GWAS database](https://gwas.mrcieu.ac.uk/) comprises over 10,000 curated, QC'd and harmonised complete GWAS summary datasets and can be queried using an API. See [here](https://gwas-api.mrcieu.ac.uk/docs) for documentation on the API itself. This R package is a wrapper to make generic calls to the API, plus convenience functions for specific queries.
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14 changes: 14 additions & 0 deletions codecov.yml
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comment: false

coverage:
status:
project:
default:
target: auto
threshold: 1%
informational: true
patch:
default:
target: auto
threshold: 1%
informational: true

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