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Precompiling GLMakie fails with ImageIO 0.4 #3461

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felixcremer opened this issue Dec 11, 2023 · 2 comments · Fixed by #4401
Closed
2 tasks

Precompiling GLMakie fails with ImageIO 0.4 #3461

felixcremer opened this issue Dec 11, 2023 · 2 comments · Fixed by #4401
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bug dependencies Related to a package used by Makie

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@felixcremer
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  • [x ] are you running newest version (version from docs) ?
  • can you reproduce the bug with a fresh environment ? (]activate --temp; add Makie)
    No
  • What platform + GPU are you on?

When I am trying to load GLMakie with ImageIO v.0.4 in the environment I get the following precompile error. Updating ImageIO to 0.5 fixes the problem.

Should we increase the lower bound of ImageIO to at least 0.5?

julia> using GLMakie
[ Info: Precompiling GLMakie [e9467ef8-e4e7-5192-8a1a-b1aee30e663a]
Errors encountered while load FileIO.File{FileIO.DataFormat{:PNG}, String}("/home/fcremer/.julia/packages/Makie/6NLuU/assets/icons/icon-128.png").
All errors:
===========================================
Evaluation into the closed module `ImageIO` breaks incremental compilation because the side effects will not be permanent. This is likely due to some other module mutating `ImageIO` with `eval` during precompilation - don't do this.
===========================================
ArgumentError: Package ImageMagick [6218d12a-5da1-5696-b52f-db25d2ecc6d1] is required but does not seem to be installed:
 - Run `Pkg.instantiate()` to install all recorded dependencies.

===========================================

Fatal error:
ERROR: LoadError: Evaluation into the closed module `ImageIO` breaks incremental compilation because the side effects will not be permanent. This is likely due to some other module mutating `ImageIO` with `eval` during precompilation - don't do this.
Stacktrace:
  [1] eval
    @ ./boot.jl:370 [inlined]
  [2] (::ImageIO.var"#1#2"{Symbol})()
    @ ImageIO ~/.julia/packages/ImageIO/uPn5K/src/ImageIO.jl:19
  [3] lock(f::ImageIO.var"#1#2"{Symbol}, l::ReentrantLock)
    @ Base ./lock.jl:229
  [4] checked_import
    @ ~/.julia/packages/ImageIO/uPn5K/src/ImageIO.jl:8 [inlined]
  [5] load(f::FileIO.File{FileIO.DataFormat{:PNG}, String}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
    @ ImageIO ~/.julia/packages/ImageIO/uPn5K/src/ImageIO.jl:27
  [6] load(f::FileIO.File{FileIO.DataFormat{:PNG}, String})
    @ ImageIO ~/.julia/packages/ImageIO/uPn5K/src/ImageIO.jl:26
  [7] #invokelatest#2
    @ ./essentials.jl:819 [inlined]
  [8] invokelatest
    @ ./essentials.jl:816 [inlined]
  [9] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
    @ FileIO ~/.julia/packages/FileIO/BE7iZ/src/loadsave.jl:219
 [10] action
    @ ~/.julia/packages/FileIO/BE7iZ/src/loadsave.jl:196 [inlined]
 [11] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::Symbol, ::String; options::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
    @ FileIO ~/.julia/packages/FileIO/BE7iZ/src/loadsave.jl:185
 [12] action
    @ ~/.julia/packages/FileIO/BE7iZ/src/loadsave.jl:185 [inlined]
 [13] load(::String; options::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
    @ FileIO ~/.julia/packages/FileIO/BE7iZ/src/loadsave.jl:113
 [14] load
    @ ~/.julia/packages/FileIO/BE7iZ/src/loadsave.jl:109 [inlined]
 [15] _broadcast_getindex_evalf
    @ ./broadcast.jl:683 [inlined]
 [16] _broadcast_getindex
    @ ./broadcast.jl:656 [inlined]
 [17] getindex
    @ ./broadcast.jl:610 [inlined]
 [18] copy
    @ ./broadcast.jl:912 [inlined]
 [19] materialize
    @ ./broadcast.jl:873 [inlined]
 [20] icon()
    @ Makie ~/.julia/packages/Makie/6NLuU/src/Makie.jl:312
 [21] empty_screen(debugging::Bool; reuse::Bool)
    @ GLMakie ~/.julia/packages/GLMakie/29Rzq/src/screen.jl:260
 [22] empty_screen
    @ ~/.julia/packages/GLMakie/29Rzq/src/screen.jl:222 [inlined]
 [23] singleton_screen(debugging::Bool)
    @ GLMakie ~/.julia/packages/GLMakie/29Rzq/src/screen.jl:329
 [24] macro expansion
    @ ~/.julia/packages/GLMakie/29Rzq/src/precompiles.jl:21 [inlined]
 [25] macro expansion
    @ ~/.julia/packages/PrecompileTools/kmH5L/src/workloads.jl:78 [inlined]
 [26] macro expansion
    @ ~/.julia/packages/GLMakie/29Rzq/src/precompiles.jl:18 [inlined]
 [27] macro expansion
    @ ~/.julia/packages/PrecompileTools/kmH5L/src/workloads.jl:140 [inlined]
 [28] top-level scope
    @ ~/.julia/packages/GLMakie/29Rzq/src/precompiles.jl:16
Stacktrace:
  [1] handle_error(e::ErrorException, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}})
    @ FileIO ~/.julia/packages/FileIO/BE7iZ/src/error_handling.jl:61
  [2] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String)
    @ FileIO ~/.julia/packages/FileIO/BE7iZ/src/error_handling.jl:56
  [3] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
    @ FileIO ~/.julia/packages/FileIO/BE7iZ/src/loadsave.jl:228
  [4] action
    @ ~/.julia/packages/FileIO/BE7iZ/src/loadsave.jl:196 [inlined]
  [5] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::Symbol, ::String; options::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
    @ FileIO ~/.julia/packages/FileIO/BE7iZ/src/loadsave.jl:185
  [6] action
    @ ~/.julia/packages/FileIO/BE7iZ/src/loadsave.jl:185 [inlined]
  [7] load(::String; options::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
    @ FileIO ~/.julia/packages/FileIO/BE7iZ/src/loadsave.jl:113
  [8] load
    @ ~/.julia/packages/FileIO/BE7iZ/src/loadsave.jl:109 [inlined]
  [9] _broadcast_getindex_evalf
    @ ./broadcast.jl:683 [inlined]
 [10] _broadcast_getindex
    @ ./broadcast.jl:656 [inlined]
 [11] getindex
    @ ./broadcast.jl:610 [inlined]
 [12] copy
    @ ./broadcast.jl:912 [inlined]
 [13] materialize
    @ ./broadcast.jl:873 [inlined]
 [14] icon()
    @ Makie ~/.julia/packages/Makie/6NLuU/src/Makie.jl:312
 [15] empty_screen(debugging::Bool; reuse::Bool)
    @ GLMakie ~/.julia/packages/GLMakie/29Rzq/src/screen.jl:260
 [16] empty_screen
    @ ~/.julia/packages/GLMakie/29Rzq/src/screen.jl:222 [inlined]
 [17] singleton_screen(debugging::Bool)
    @ GLMakie ~/.julia/packages/GLMakie/29Rzq/src/screen.jl:329
 [18] macro expansion
    @ ~/.julia/packages/GLMakie/29Rzq/src/precompiles.jl:21 [inlined]
 [19] macro expansion
    @ ~/.julia/packages/PrecompileTools/kmH5L/src/workloads.jl:78 [inlined]
 [20] macro expansion
    @ ~/.julia/packages/GLMakie/29Rzq/src/precompiles.jl:18 [inlined]
 [21] macro expansion
    @ ~/.julia/packages/PrecompileTools/kmH5L/src/workloads.jl:140 [inlined]
 [22] top-level scope
    @ ~/.julia/packages/GLMakie/29Rzq/src/precompiles.jl:16
 [23] include(mod::Module, _path::String)
    @ Base ./Base.jl:457
 [24] include(x::String)
    @ GLMakie ~/.julia/packages/GLMakie/29Rzq/src/GLMakie.jl:1
 [25] top-level scope
    @ ~/.julia/packages/GLMakie/29Rzq/src/GLMakie.jl:66
 [26] include
    @ ./Base.jl:457 [inlined]
 [27] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2049
 [28] top-level scope
    @ stdin:3
in expression starting at /home/fcremer/.julia/packages/GLMakie/29Rzq/src/precompiles.jl:15
in expression starting at /home/fcremer/.julia/packages/GLMakie/29Rzq/src/GLMakie.jl:1
in expression starting at stdin:3
ERROR: Failed to precompile GLMakie [e9467ef8-e4e7-5192-8a1a-b1aee30e663a] to "/home/fcremer/.julia/compiled/v1.9/GLMakie/jl_a0nhsB".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:35
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
    @ Base ./loading.jl:2294
  [3] compilecache
    @ ./loading.jl:2167 [inlined]
  [4] _require(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:1805
  [5] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1660
  [6] macro expansion
    @ ./loading.jl:1648 [inlined]
  [7] macro expansion
    @ ./lock.jl:267 [inlined]
  [8] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1611
  [9] eval
    @ ./boot.jl:370 [inlined]
 [10] eval
    @ ./Base.jl:68 [inlined]
 [11] repleval(m::Module, code::Expr, #unused#::String)
    @ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.61.2/scripts/packages/VSCodeServer/src/repl.jl:229
 [12] (::VSCodeServer.var"#110#112"{Module, Expr, REPL.LineEditREPL, REPL.LineEdit.Prompt})()
    @ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.61.2/scripts/packages/VSCodeServer/src/repl.jl:192
 [13] with_logstate(f::Function, logstate::Any)
    @ Base.CoreLogging ./logging.jl:514
 [14] with_logger
    @ ./logging.jl:626 [inlined]
 [15] (::VSCodeServer.var"#109#111"{Module, Expr, REPL.LineEditREPL, REPL.LineEdit.Prompt})()
    @ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.61.2/scripts/packages/VSCodeServer/src/repl.jl:193
 [16] #invokelatest#2
    @ ./essentials.jl:819 [inlined]
 [17] invokelatest(::Any)
    @ Base ./essentials.jl:816
 [18] macro expansion
    @ ~/.vscode/extensions/julialang.language-julia-1.61.2/scripts/packages/VSCodeServer/src/eval.jl:34 [inlined]
 [19] (::VSCodeServer.var"#62#63")()
    @ VSCodeServer ./task.jl:514
@xlxs4
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xlxs4 commented Dec 11, 2023 •
edited
Loading

Can reproduce with ImageIO 0.4.1. The problem indeed goes away when using later versions

julia> versioninfo()
Julia Version 1.10.0-rc2
Commit dbb9c46795b (2023-12-03 15:25 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: macOS (arm64-apple-darwin22.4.0)
  CPU: 10 × Apple M2 Pro
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-15.0.7 (ORCJIT, apple-m1)
  Threads: 1 on 6 virtual cores
Environment:
  JULIA_EDITOR = code
  JULIA_NUM_THREADS =

@xlxs4
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xlxs4 commented Dec 11, 2023

btw you might find something like SciML/SciMLBase.jl#553 useful

@t-bltg t-bltg added the dependencies Related to a package used by Makie label Dec 11, 2023
SimonDanisch added a commit that referenced this issue Sep 24, 2024
@SimonDanisch
Restricting imageio to 0.5+
797e580 
Closes #3461
@SimonDanisch SimonDanisch mentioned this issue Sep 24, 2024
Merged
SimonDanisch added a commit that referenced this issue Sep 24, 2024
@SimonDanisch
Restricting imageio to 0.5+ (#4401)
bb5cc0a 
Closes #3461
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Restricting imageio to 0.5+ MakieOrg/Makie.jl
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@t-bltg @felixcremer @xlxs4