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rebase #54

Merged
merged 176 commits into from
Aug 11, 2022
Merged

rebase #54

merged 176 commits into from
Aug 11, 2022

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stemangiola
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@stemangiola
update benchmark
0568ae3
@stemangiola
fix devs and create counts function
9e46ba8
@stemangiola
set seed for simulation
6fcfbb1
@stemangiola
make model more stable
4c06cad
@stemangiola
use QR decomposition and add utilities
6962e2d
@stemangiola
fix for formula with 2+ covariates
cd84187
@stemangiola
add figures article
8346a8d
@stemangiola
update plots
da9a912
@stemangiola
detect outliers without variance association + update figures
4298644
@stemangiola
update novel result
055cc16
@stemangiola
update figures
1ce5345
@stemangiola
made sure variational approximate MCMC, the means match the sd are un…
32502bf 
…derestimated at times
@stemangiola
approximate variational by default
e42cee6
@stemangiola
Merge pull request #31 from stemangiola/non-centered-parameterisation
7866728 
Non centered parameterisation
@stemangiola
Merge branch 'master' into dev
bb39b21
@stemangiola
small fix
d20a1ed
@stemangiola
no variational default
c9a9ee9
@stemangiola
docs
df21d14
@stemangiola
force full MCMC for last inference
3eaffe9
@stemangiola
Merge pull request #33 from stemangiola/non-centered-parameterisation
8acdfc5 
force full MCMC for last inference
@stemangiola
approximate by default
cd83bde
@stemangiola
Merge branch 'dev' of github.com:stemangiola/sccomp into dev
6bc08b2
@stemangiola
update approximation options
42aab80
@stemangiola
change tests
a37f990
@stemangiola
Merge pull request #32 from stemangiola/dev
05b1985 
Dev
@stemangiola
fix dependencies
0a90dd2
@stemangiola
update benchmark with rlm with proper convergence
0e2a512
@stemangiola
add estimate for simulation
caff0cb
@stemangiola
add estimate argument
af66665
@stemangiola
update equations
efa09ab
@stemangiola
DELETE more files
289576d
@stemangiola
Merge branch 'master' of github.com:stemangiola/sccomp
7ae1822
@stemangiola
fix alpha regression
f716930
@stemangiola
merge master
e32083c 
Merge branch 'master' into contrasts

# Please enter a commit message to explain why this merge is necessary,
# especially if it merges an updated upstream into a topic branch.
#
# Lines starting with '#' will be ignored, and an empty message aborts
# the commit.
@stemangiola
Merge branch 'contrast-model-fix-broken' into contrasts
74e0491
@stemangiola
update model
051ff56
@stemangiola
few fixes
9a29025
@stemangiola
small fix for continuous variables
f9b7d3d
@stemangiola
Update DESCRIPTION
07ea714
@stemangiola
Merge pull request #60 from stemangiola/contrasts
ce590f2 
Contrasts
@stemangiola
Merge branch 'generate-data-allow-few-covariates' into intermediate_m…
efc95af 
…aster
@stemangiola
adjust some tests
6b43b79
@stemangiola
Merge pull request #61 from stemangiola/intermediate_master
1a829ac 
rebase
@stemangiola
update generate data
5efc31b
@stemangiola
change default
9cb9fe2
@stemangiola
Merge pull request #63 from stemangiola/use_variational_by_default
a8b0148 
change default
@stemangiola
save continuous covariates
f71d252
@stemangiola
git ignore
8318f61
@stemangiola
fix data generation bug
b2113bb
@stemangiola
fix check
d48ebf1
@stemangiola
fix docs
bd59347
@stemangiola
change method and models
7c3a3fb
@stemangiola
update generate data
260f5a8
@stemangiola
fix data generation bug
e48bc03
@stemangiola
fix check
b73e525
@stemangiola
fix docs
dc06693
@stemangiola
pull
d7b6cbc 
Merge branch 'generate-data-allow-few-covariates' of github.com:stemangiola/sccomp into generate-data-allow-few-covariates

Conflicts:
	R/utilities.R
	inst/stan/glm_multi_beta_binomial_generate_date.stan
@stemangiola
fix simulate data call
ae3fb04
@stemangiola
Merge pull request #62 from stemangiola/generate-data-allow-few-covar…
5a313d9 
…iates

Generate data allow few covariates
@stemangiola stemangiola merged commit 891ef1f into cmdstanr Aug 11, 2022
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@stemangiola