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Incorporate spatial information in dimensionality reduction methods for high-dimension images

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ManiVaultStudio/SpidrPlugin

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Spatial Information in Dimensionality Reduction (Spidr) Plugin

The plugin wraps the Spidr implementation from here, which builds on top of the A-tSNE implementation from the HDILib.

Example: embeddings and re-colored data

Build

To clone the plugin repo and all its dependencies:

git clone --recurse-submodule https://github.com/ManiVaultStudio/SpidrPlugin.git

Build the project with the same generator as the ManiVault core, see instructions here.

References

This plugin implements methods presented in Incorporating Texture Information into Dimensionality Reduction for High-Dimensional Images (2022), published at PacificVis 2022. A preprint is available on arXiv, the conference talk recording and other supplemental material are available here.

@InProceedings { VVLEH22,
  author       = "Vieth, Alexander and Vilanova, Anna and Lelieveldt, Boudewijn P.F. and Eisemann, Elmar and H\öllt, Thomas",
  title        = "Incorporating Texture Information into Dimensionality Reduction for High-Dimensional Images",
  booktitle    = "2022 15th IEEE Pacific Visualization Symposium (PacificVis)",
  pages        = "11-20",
  year         = "2022",
  doi          = "10.1109/PacificVis53943.2022.00010",
  keywords     = "Mathematics of computing, Dimensionality reduction,  Human-centered computing, Visualization techniques, Human-centered computing, Visual analytics",
  url          = "http://graphics.tudelft.nl/Publications-new/2022/VVLEH22"
}

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