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@MannLabs

Mann Labs

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  1. CKG CKG Public

    Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge disco…

    Jupyter Notebook 445 100

  2. alphapept alphapept Public

    A modular, python-based framework for mass spectrometry. Powered by nbdev.

    HTML 168 31

  3. alphapeptdeep alphapeptdeep Public

    Deep learning framework for proteomics

    Jupyter Notebook 112 23

  4. alphatims alphatims Public

    An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.

    Python 81 26

  5. alphamap alphamap Public

    An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.

    Jupyter Notebook 76 18

  6. alphadia alphadia Public

    modular & open DIA search

    Jupyter Notebook 55 3

Repositories

Showing 10 of 43 repositories
  • alphapeptstats Public

    Python Package for the downstream analysis of mass-spectrometry-based proteomics data

    MannLabs/alphapeptstats’s past year of commit activity
    Jupyter Notebook 60 Apache-2.0 15 19 12 Updated Nov 22, 2024
  • scPortrait Public
    MannLabs/scPortrait’s past year of commit activity
    Jupyter Notebook 28 Apache-2.0 1 22 (1 issue needs help) 4 Updated Nov 22, 2024
  • alphashared Public

    Shared non-production code for AlphaX packages

    MannLabs/alphashared’s past year of commit activity
    Python 0 0 0 0 Updated Nov 22, 2024
  • alphabase Public

    Infrastructure of AlphaX ecosystem

    MannLabs/alphabase’s past year of commit activity
    Jupyter Notebook 31 Apache-2.0 9 9 15 Updated Nov 22, 2024
  • alphapeptdeep Public

    Deep learning framework for proteomics

    MannLabs/alphapeptdeep’s past year of commit activity
    Jupyter Notebook 112 Apache-2.0 23 26 0 Updated Nov 22, 2024
  • alphadia Public

    modular & open DIA search

    MannLabs/alphadia’s past year of commit activity
    Jupyter Notebook 55 Apache-2.0 3 17 2 Updated Nov 22, 2024
  • scPortrait-notebooks Public
    MannLabs/scPortrait-notebooks’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Nov 17, 2024
  • py-lmd Public
    MannLabs/py-lmd’s past year of commit activity
    Jupyter Notebook 8 MIT 1 4 0 Updated Nov 8, 2024
  • alphamap Public

    An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.

    MannLabs/alphamap’s past year of commit activity
    Jupyter Notebook 76 Apache-2.0 18 17 9 Updated Nov 8, 2024
  • directlfq Public

    Fast and accurate label-free quantification for small and very large numbers of proteomes

    MannLabs/directlfq’s past year of commit activity
    Jupyter Notebook 43 Apache-2.0 5 8 0 Updated Nov 6, 2024
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