MEDS 0.3 Release Candidate #38
Workflow file for this run
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| name: Run MEDS-ETL tests | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.10"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| # Clone the MEDS-ETL repository | |
| - name: Clone MEDS-ETL repository | |
| run: git clone https://github.com/Medical-Event-Data-Standard/meds_etl.git | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install flake8 pytest | |
| # Install MEDS-ETL | |
| - name: Install MEDS-ETL | |
| run: | | |
| cd meds_etl | |
| python -m pip install . | |
| # Download MIMIC-IV-Demo (v2.2) | |
| - name: Download MIMIC-IV-Demo (v2.2) | |
| run: | | |
| cd meds_etl | |
| wget -r -N -c --no-host-directories --cut-dirs=1 -np -P tests/data https://physionet.org/files/mimic-iv-demo/2.2/ | |
| # Run MEDS-ETL tests | |
| - name: Run MEDS-ETL tests | |
| run: | | |
| cd meds_etl | |
| pytest -v |