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When the number of text boxes is too large (> 500), augmenting poly one by one will incur severe performance degration. According to the performance guide, we can augment all keypoints in the image in one run.
For keypoint-based and heatmap-based augmentation, try to increase the number of items per augmented instance. E.g. augment_keypoints() accepts a list of KeypointsOnImage instances, with each such instance representing the keypoints on an image. Try to place for each image all keypoints in the respective KeypointsOnImage instance instead of splitting them into multiple such instances (which would be more work anyways). The same is true for bounding boxes, heatmaps and segmentation maps.
In my case, there are 700 boxes in the image. The processing time is about 3s. After optimization, it becomes 0.03s.