This script loads the data used by the mocomakers meetup Computational Bio & Pharma - Working Group for Rare Disease.
For access to the input data files, please contact Matt Zamora via matt@mocomakers.com. The data files should be placed in the data directory.
The output of this python script will upload the 2 data tables into a sqlite database called rare_disease.db. The inputs are:
secondary-screen-dose-response-curve-parameters.csvfile that has medication effect on disease and targetOmicsSomaticMutationsMatrixDamaging.csvfile that holds medication and target pivot table indicating level of mutation
It will also create a tables that merges the data from both tables and outputs a combined table that holds only the mutated records for medication effect on disease and target of a certain level of mutation 0-2. It also creates an aggregated version of these tables.
To the extent possible under law, Jacob Barhak has waived all copyright and related or neighboring rights to Data Load For Computational Bio & Pharma - Working Group for Rare Disease This work is published from: Israel.