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Merge pull request #156 from ModelOriented/CRAN-release
CRAN release
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| Original file line number | Diff line number | Diff line change |
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| Version: 0.9.4 | ||
| Date: 2024-08-20 20:00:54 UTC | ||
| SHA: 6269666c0bc2dbb48fd4193adec46b9fbf4fdccd | ||
| Version: 0.9.5 | ||
| Date: 2024-09-14 14:14:08 UTC | ||
| SHA: e775f6a245c773e04687d846e06e9aeb24702bac |
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| # shapviz 0.9.4 | ||
| # shapviz 0.9.5 (RESUBMISSION) | ||
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| Dear CRAN team | ||
| Fixed duplicated vignette entry, as pointed out by the automatic checks by CRAN. | ||
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| This update mainly ensures that upcoming XGBoost version 2.x.x will work. | ||
| ## Original message | ||
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| Dear CRAN team | ||
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| ### Local checks | ||
| This update brings a new vignette, and improvements of the existing documentation. | ||
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| Ok, with note | ||
| ### Local checks | ||
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| Packages which this enhances but not available for checking: 'fastshap', 'h2o' | ||
| 0 errors, 0 warnings, 0 notes | ||
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| ### Winbuilder() | ||
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| Status: OK | ||
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| ## Reverse dependencies (2) | ||
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| - fastshap 0.1.1 ── E: 0 | W: 1 | N: 1 | ||
| - lowml 0.1.3 ── E: 0 | W: 0 | N: 0 | ||
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| OK: 2 | ||
| BROKEN: 0 | ||
| 2 OK |
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| Original file line number | Diff line number | Diff line change |
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| @@ -1,7 +1,12 @@ | ||
| ## revdepcheck results | ||
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| We checked 2 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. | ||
| We checked 2 reverse dependencies (1 from CRAN + 1 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. | ||
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| * We saw 0 new problems | ||
| * We failed to check 0 packages | ||
| * We failed to check 1 packages | ||
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| Issues with CRAN packages are summarised below. | ||
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| ### Failed to check | ||
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| * fastshap (NA) |
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| *Wow, no problems at all. :)* | ||
| # fastshap | ||
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| <details> | ||
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| * Version: 0.1.1 | ||
| * GitHub: https://github.com/bgreenwell/fastshap | ||
| * Source code: https://github.com/cran/fastshap | ||
| * Date/Publication: 2024-02-22 22:00:02 UTC | ||
| * Number of recursive dependencies: 90 | ||
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| Run `revdepcheck::revdep_details(, "fastshap")` for more info | ||
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| </details> | ||
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| ## In both | ||
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| * R CMD check timed out | ||
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| * checking package dependencies ... NOTE | ||
| ``` | ||
| Package which this enhances but not available for checking: 'lightgbm' | ||
| ``` | ||
| * checking Rd cross-references ... NOTE | ||
| ``` | ||
| Package unavailable to check Rd xrefs: 'lightgbm' | ||
| ``` | ||
| # flowml | ||
| <details> | ||
| * Version: | ||
| * GitHub: https://github.com/ModelOriented/shapviz | ||
| * Source code: NA | ||
| * Number of recursive dependencies: 0 | ||
| </details> | ||
| ## Error before installation | ||
| ### Devel | ||
| ``` | ||
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| There are binary versions available but the source versions are later: | ||
| binary source needs_compilation | ||
| abind 1.4-5 1.4-8 FALSE | ||
| gam 1.22-4 1.22-5 TRUE | ||
| ps 1.7.7 1.8.0 TRUE | ||
| RcppArmadillo 14.0.0-1 14.0.2-1 TRUE | ||
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| Binaries will be installed | ||
| package 'ABCanalysis' successfully unpacked and MD5 sums checked | ||
| ... | ||
| package 'pls' successfully unpacked and MD5 sums checked | ||
| package 'plyr' successfully unpacked and MD5 sums checked | ||
| package 'png' successfully unpacked and MD5 sums checked | ||
| package 'prettyunits' successfully unpacked and MD5 sums checked | ||
| package 'pROC' successfully unpacked and MD5 sums checked | ||
| package 'processx' successfully unpacked and MD5 sums checked | ||
| package 'prodlim' successfully unpacked and MD5 sums checked | ||
| package 'progress' successfully unpacked and MD5 sums checked | ||
| package 'progressr' successfully unpacked and MD5 sums checked | ||
| package 'promises' successfully unpacked and MD5 sums checked | ||
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| Warning: unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4: | ||
| cannot open URL 'https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4/PACKAGES' | ||
| Warning: unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4: | ||
| cannot open URL 'https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4/PACKAGES' | ||
| Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4: | ||
| cannot open URL 'https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4/PACKAGES' | ||
| Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4: | ||
| cannot open URL 'https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4/PACKAGES' | ||
| Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4: | ||
| cannot open URL 'https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4/PACKAGES' | ||
| ... | ||
| 2: In download.file(url, destfile, method, mode = "wb", ...) : | ||
| downloaded length 247004746 != reported length 266665380 | ||
| 3: In download.file(url, destfile, method, mode = "wb", ...) : | ||
| URL 'https://cran.rstudio.com/bin/windows/contrib/4.4/h2o_3.44.0.3.zip': Timeout of 60 seconds was reached | ||
| 4: In download.file(url, destfile, method, mode = "wb", ...) : | ||
| URL 'https://cran.rstudio.com/bin/windows/contrib/4.4/h2o_3.44.0.3.zip': Timeout of 60 seconds was reached | ||
| Warning in download.packages(pkgs, destdir = tmpd, available = available, : | ||
| download of package 'h2o' failed | ||
| Warning in download.packages(pkgs, destdir = tmpd, available = available, : | ||
| download of package 'h2o' failed | ||
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| ``` | ||
| ### CRAN | ||
| ``` | ||
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| There are binary versions available but the source versions are later: | ||
| binary source needs_compilation | ||
| abind 1.4-5 1.4-8 FALSE | ||
| gam 1.22-4 1.22-5 TRUE | ||
| ps 1.7.7 1.8.0 TRUE | ||
| RcppArmadillo 14.0.0-1 14.0.2-1 TRUE | ||
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| Binaries will be installed | ||
| package 'ABCanalysis' successfully unpacked and MD5 sums checked | ||
| ... | ||
| package 'pls' successfully unpacked and MD5 sums checked | ||
| package 'plyr' successfully unpacked and MD5 sums checked | ||
| package 'png' successfully unpacked and MD5 sums checked | ||
| package 'prettyunits' successfully unpacked and MD5 sums checked | ||
| package 'pROC' successfully unpacked and MD5 sums checked | ||
| package 'processx' successfully unpacked and MD5 sums checked | ||
| package 'prodlim' successfully unpacked and MD5 sums checked | ||
| package 'progress' successfully unpacked and MD5 sums checked | ||
| package 'progressr' successfully unpacked and MD5 sums checked | ||
| package 'promises' successfully unpacked and MD5 sums checked | ||
|
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||
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| Warning: unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4: | ||
| cannot open URL 'https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4/PACKAGES' | ||
| Warning: unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4: | ||
| cannot open URL 'https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4/PACKAGES' | ||
| Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4: | ||
| cannot open URL 'https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4/PACKAGES' | ||
| Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4: | ||
| cannot open URL 'https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4/PACKAGES' | ||
| Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4: | ||
| cannot open URL 'https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4/PACKAGES' | ||
| ... | ||
| 2: In download.file(url, destfile, method, mode = "wb", ...) : | ||
| downloaded length 247004746 != reported length 266665380 | ||
| 3: In download.file(url, destfile, method, mode = "wb", ...) : | ||
| URL 'https://cran.rstudio.com/bin/windows/contrib/4.4/h2o_3.44.0.3.zip': Timeout of 60 seconds was reached | ||
| 4: In download.file(url, destfile, method, mode = "wb", ...) : | ||
| URL 'https://cran.rstudio.com/bin/windows/contrib/4.4/h2o_3.44.0.3.zip': Timeout of 60 seconds was reached | ||
| Warning in download.packages(pkgs, destdir = tmpd, available = available, : | ||
| download of package 'h2o' failed | ||
| Warning in download.packages(pkgs, destdir = tmpd, available = available, : | ||
| download of package 'h2o' failed | ||
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| ``` |
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