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@MouseLand

MouseLand

collaborative analysis of neural recordings

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  1. cellpose cellpose Public

    a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

    Jupyter Notebook 1.4k 408

  2. Kilosort Kilosort Public

    Fast spike sorting with drift correction

    Python 494 249

  3. suite2p suite2p Public

    cell detection in calcium imaging recordings

    Jupyter Notebook 362 243

  4. rastermap rastermap Public

    a visualization method for neural data

    Python 199 48

  5. facemap facemap Public

    Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

    Python 161 61

  6. stringer-pachitariu-et-al-2018b stringer-pachitariu-et-al-2018b Public

    Responses of 10,000 neurons to 2,800 natural images

    MATLAB 68 21

Repositories

Showing 10 of 20 repositories
  • Kilosort Public

    Fast spike sorting with drift correction

    MouseLand/Kilosort’s past year of commit activity
    Python 494 GPL-3.0 249 32 3 Updated Dec 18, 2024
  • facemap Public

    Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

    MouseLand/facemap’s past year of commit activity
    Python 161 GPL-3.0 61 11 1 Updated Dec 5, 2024
  • cellpose Public

    a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

    MouseLand/cellpose’s past year of commit activity
    Jupyter Notebook 1,422 BSD-3-Clause 408 54 (1 issue needs help) 14 Updated Nov 21, 2024
  • MouseLand.github.io Public

    website for Pachitariu-Stringer lab

    MouseLand/MouseLand.github.io’s past year of commit activity
    CSS 0 0 0 0 Updated Nov 14, 2024
  • cellpose-napari Public

    napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool

    MouseLand/cellpose-napari’s past year of commit activity
    Python 48 BSD-3-Clause 22 8 2 Updated Oct 27, 2024
  • rastermap Public

    a visualization method for neural data

    MouseLand/rastermap’s past year of commit activity
    Python 199 GPL-3.0 48 4 0 Updated Oct 19, 2024
  • course-materials Public
    MouseLand/course-materials’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 1 0 0 Updated Aug 27, 2024
  • suite2p Public

    cell detection in calcium imaging recordings

    MouseLand/suite2p’s past year of commit activity
    Jupyter Notebook 362 GPL-3.0 243 109 (1 issue needs help) 7 Updated Jun 19, 2024
  • stringer-pachitariu-et-al-2018a Public

    Recordings of 10k neurons during spontaneous behaviors

    MouseLand/stringer-pachitariu-et-al-2018a’s past year of commit activity
    MATLAB 50 15 2 2 Updated Mar 22, 2024
  • neuropop Public

    analysis tools for large-scale neural recordings

    MouseLand/neuropop’s past year of commit activity
    Python 12 GPL-3.0 2 0 0 Updated Nov 16, 2023
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