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@TCP-Lab

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MrHedmad/README.md

Hello - I'm Luca

I'm a PhD student at the University of Turin, Italy in the Complex Systems for Life Sciences program. My PhD is focused on the role of transporters in the physiology of cancer.

I'm very interested in Data Stewardship, FAIR data and in particular FAIR Orchestration.

I'm an author and the maintainer for (almost) all packages in my laboratory's organization.

If you want to learn more about me, take a look at my ABOUT page. It contains more information on what I do, as well as my Curriculum Vitae and publication lists.

I really like collaborating with others. If you want to collaborate, check the CONTRIBUTING files in the repository for the project you want to contribute to, or contact me directly!

I administrate bioinfo.ds, a bioniformatics-centered community on Discord.

πŸ“¨ Contact Me

All my contact information lives in my linktree. I strive to keep it up-to-date!

My projects

This is a (possibly incomplete) list of my finished, abandoned (πŸ’€) and current (🚧) projects. I look at this when I want to feel good about myself.

πŸ”¨ Tools

  • Kerblam! and Kerblam usage examples: a Rust tool / project management system that makes your life easier when dealing with data analysis.
  • Metasplit: a Python tool to break up (large) CSV files column-wise based on an external metadata file.
  • Panid: a Python tool to convert between different IDs (e.g. ensembl, HGNC, etc...).
  • Fast Cohen's D: a small Rust tool to calculate Cohen's D.
  • BioTEA: a containerized Python tool to analysi microarray expression.

πŸ“– Resources

πŸ“¦ Libraries

  • Bonsai a Python library to handle Tree like data structures. It's very easy to use.

πŸ”¬ Data analyses

πŸ“ Papers and preprints

πŸ›Έ Others

Pinned Loading

  1. kerblam kerblam Public

    A Rust CLI to manage your data analysis projects in a streamlined, easy and simple way, getting reproducibility for free.

    Rust 10 1

  2. TCP-Lab/transportome_profiler TCP-Lab/transportome_profiler Public

    Code to profile the expression of the transportome

    R

  3. metasplit metasplit Public

    A program to split (very) large .csv files column-wise based on metadata

    Python 1

  4. bonsai bonsai Public

    A tiny tree implementation in Python.

    Python 1