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@Munfred Munfred released this 15 Sep 01:56
· 29 commits to master since this release
bendavid2020
9319940

bendavid2020.h5ad

AnnData object with n_obs × n_vars = 55508 × 20138
    obs: 'experiment', 'neuronal_subtype', 'barcode', 'study', 'cell_class', 'cell_type'
    var: 'wbps_gene_id', 'chromosome_name', 'start_position', 'end_position', 'strand', 'external_gene_id', 'external_transcript_id', 'wormbase_locus', 'wormbase_gseq', 'gene_short_name', 'gene_name'

obs entries look like so:

                        experiment neuronal_subtype                cell_class  \
barcode                                                                         
F4_1_TGTAACGGTTAGCTAC-1       F4_1              nan                 Intestine   
F4_1_GGCAGTCCAGCCTATA-1       F4_1              nan                 Intestine   
F4_1_AAGTACCGTCATCCCT-1       F4_1              nan             Somatic Gonad   
F4_1_AAGATAGTCCCTCTAG-1       F4_1              nan                 Intestine   
F4_1_ACCAAACCAGCTGTAT-1       F4_1              nan  Pharynx and Arcade Cells   

                                        cell_type  
barcode                                            
F4_1_TGTAACGGTTAGCTAC-1                 Intestine  
F4_1_GGCAGTCCAGCCTATA-1                 Intestine  
F4_1_AAGTACCGTCATCCCT-1             Somatic Gonad  
F4_1_AAGATAGTCCCTCTAG-1                 Intestine  
F4_1_ACCAAACCAGCTGTAT-1  Pharynx and Arcade Cells

var entries look like so:

                  wbps_gene_id chromosome_name  start_position  end_position  \
gene_id                                                                        
WBGene00010957  WBGene00010957           MtDNA             113           549   
WBGene00010958  WBGene00010958           MtDNA             549           783   
WBGene00010959  WBGene00010959           MtDNA            1763          2635   
WBGene00010960  WBGene00010960           MtDNA            2634          3235   
WBGene00010961  WBGene00010961           MtDNA            3389          4269   

                strand external_gene_id external_transcript_id wormbase_locus  \
gene_id                                                                         
WBGene00010957       1           nduo-6               MTCE.3.1         nduo-6   
WBGene00010958       1           ndfl-4               MTCE.4.1         ndfl-4   
WBGene00010959       1           nduo-1              MTCE.11.1         nduo-1   
WBGene00010960       1            atp-6              MTCE.12.1          atp-6   
WBGene00010961       1           nduo-2              MTCE.16.1         nduo-2   

               wormbase_gseq gene_short_name gene_name  
gene_id                                                 
WBGene00010957        MTCE.3          nduo-6    nduo-6  
WBGene00010958        MTCE.4          ndfl-4    ndfl-4  
WBGene00010959       MTCE.11          nduo-1    nduo-1  
WBGene00010960       MTCE.12           atp-6     atp-6  
WBGene00010961       MTCE.16          nduo-2    nduo-2
Assets 3
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