Concatenated anndata with Cao 2017, Packer 2019 and Taylor 2019 data
Munfred
released this
11 Feb 04:31
·
56 commits
to master
since this release
AnnData object with n_obs × n_vars = 191138 × 22761
obs: 'barcode', 'cell_type', 'embryo_time', 'embryo_time_bin', 'experiment', 'lineage', 'numi', 'passed_qc', 'plot_cell_type', 'raw_embryo_time', 'raw_embryo_time_bin', 'size_factor', 'study', 'time_point', 'tissue_type'
var: 'gene_id', 'gene_name', 'gene_description'
Cell from each study
packer 89701
taylor 65450
cao 35987
Cells in each experiment (batches)
L2_experiment_1 35480
Waterston_400_minutes 25875
Waterston_300_minutes 17168
eat-4 12743
Murray_b01 12129
acr-2 11719
Waterston_500_minutes_batch_2 11589
Waterston_500_minutes_batch_1 10532
Murray_r17 9363
Pan 9216
unc-3 6165
tph-1_ceh-10 4810
ift-20 4056
cho-1_1 3849
cho-1_2 3471
unc-47_2 3123
Murray_b02 3045
ceh-34 2648
nmr-1 2389
unc-47_1 1261
L2_experiment_2 507