Model for scvi-tools v0.11.0 integrating three C. elegans datasets.
More information at https://wormbase.github.io/single-cell/
| Short Name | Total cells | Method | h5ad | Summary | Article/preprint | Original Data | Notes |
|---|---|---|---|---|---|---|---|
| Taylor 2020 | 100,955 | 10x v2/v3 | Download at Caltech Data | L4 larvae neurons selected via flow cytometry | Molecular topography of an entire nervous system. | GSE136049 | CeNGEN website Shiny R app to explore the data |
| Ben-David 2021 | 55,508 | 10x v2 | Download at Caltech Data | L2 larvae | Whole-organism mapping of the genetics of gene expression at cellular resolution biorxiv 2020. | PRJNA658829 | Gene count matrix was kindly provided by the authors on request |
| Packer 2019 | 89,701 | 10x v2 | Download at Caltech Data | Several timepoints of embryo development | A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution Science 2019. | GSE126954 | VisCello app for data exploration |