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Taylor et al: Cengen 2020 data release 100955 cells
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@Munfred Munfred released this 08 Jan 03:34
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Learn about vigilant mode.

Data from the Cengen 2020 preprint https://www.biorxiv.org/content/10.1101/2020.12.15.422897v1

These are the counts as outputted by cellranger without the soupX modifications. The 100955 barcodes that were labeled as cells were retained, including neuron and non neuron.


AnnData object with n_obs × n_vars = 100955 × 46911
    obs: 'dropbox_id', 'counts', 'experiment_code', 'cell_type', 'tissue'

print(adata.obs.head())
                           dropbox_id  counts experiment_code    cell_type  \
1806-ST-1-AAACCTGAGAGACGAA  1806-ST-1      65           Pan-1  Unannotated   
1806-ST-1-AAACCTGAGGTAAACT  1806-ST-1     367           Pan-1          AVF   
1806-ST-1-AAACCTGAGGTAGCCA  1806-ST-1    1792           Pan-1          AVH   
1806-ST-1-AAACCTGAGTAACCCT  1806-ST-1    1229           Pan-1          RIA   
1806-ST-1-AAACCTGAGTACGCGA  1806-ST-1    1401           Pan-1          AUA   

                                 tissue  
1806-ST-1-AAACCTGAGAGACGAA  Unannotated  
1806-ST-1-AAACCTGAGGTAAACT       Neuron  
1806-ST-1-AAACCTGAGGTAGCCA       Neuron  
1806-ST-1-AAACCTGAGTAACCCT       Neuron  
1806-ST-1-AAACCTGAGTACGCGA       Neuron  


print(adata.var.head())
Assets 3
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