iBioSim 3.1.0

This is a beta release of iBioSim 3.1.0.

In order to use this beta release, download and install iBioSim 3.0.0. Then, copy iBioSim.jar file in this beta release into the bin directory within your iBioSim install.

iBioSim-3.0.0

This is a beta release of iBioSim 3.0.0. It will be changing frequently while we work out remaining issues.

To install, follow these instructions:

• Download the zip file for your operating system and unzip it where you want the application to reside.
• For Linux users, dependencies are resolved at runtime when iBioSim is opened for the first time. In order to compile the dependencies, you need the following:
  • bison
  • flex
  • swig
  • python2
  • libxml2-dev
• Download the iBioSim.jar file and copy it into the iBioSim/bin directory.

To run iBioSim, execute the iBioSim in the top directory.

//Windows Users Warning:
If the application font appears very small, you need to follow the next steps:

1. Go to where Java is installed (usually C:\Program Files\Java\jre\bin) and right click on the java.exe file. Select Properties, click the Compatibility tab, click on "Change high DPI settings", and select "Override high DPI scaling behavior." and finally select Scaling performed by: System.

2. If the previous step didn't solve the problem, try repeating the last steps for all java*.exe files (i.e: java.exe, javaw.exe javacl.exe, etc).

3. If the previous step didn't solve the problem, open a Command Prompt and type "where ava". This will list if you have any other folders containing java.exe files. Find these other files, and follow the instructions in step 1) of each of them.