Copyright © 2024 Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany

This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

Installation

To install required packages, run

conda env create -f conda-env.yml

Usage

To start the app, run

streamlit run app.py

Container

You can get the app as a Docker container from https://hub.docker.com/r/thyra/deepcre_cpu . Make sure you bind the port 8501 when you run it to make the streamlit app accessible from the outside.

Providing selectable Genomes

If you want to provide genomes for the users to select from without having to upload them themselves, you can add them to the genomes folder. Please refer to the README in that folder for more details. If you are deploying in a container as we do, you can mount (and override) that directory so you don't have to include these large files in the container itself.