add term-progressbar in the list of dependencies (forgot long time ag…

…o). Add a dockerfile to make image with all needed dependencies to install AGAT

README.md

@@ -203,7 +203,7 @@ You will have to install all prerequisites and AGAT manually.
     * using cpan or cpanm
 
     ```
-    cpanm install bioperl Clone Graph::Directed LWP::UserAgent Carp Sort::Naturally File::Share File::ShareDir::Install Moose YAML LWP::Protocol::https
+    cpanm install bioperl Clone Graph::Directed LWP::UserAgent Carp Sort::Naturally File::Share File::ShareDir::Install Moose YAML LWP::Protocol::https Term::ProgressBar
     ```
 
     * using conda
@@ -218,13 +218,13 @@ You will have to install all prerequisites and AGAT manually.
       * manually  
 
       ```
-      conda install perl-bioperl perl-clone perl-graph perl-lwp-simple perl-carp perl-sort-naturally perl-file-share perl-file-sharedir-install perl-moose perl-yaml perl-lwp-protocol-https
+      conda install perl-bioperl perl-clone perl-graph perl-lwp-simple perl-carp perl-sort-naturally perl-file-share perl-file-sharedir-install perl-moose perl-yaml perl-lwp-protocol-https perl-term-progressbar
       ```
 
     * using your package management tool (e.g apt for Debian, Ubuntu, and related Linux distributions)
 
     ```
-    apt install libbio-perl-perl libclone-perl libgraph-perl liblwp-useragent-determined-perl libstatistics-r-perl libcarp-clan-perl libsort-naturally-perl libfile-share-perl libfile-sharedir libfile-sharedir-install-perl libyaml-perl liblwp-protocol-https-perl
+    apt install libbio-perl-perl libclone-perl libgraph-perl liblwp-useragent-determined-perl libstatistics-r-perl libcarp-clan-perl libsort-naturally-perl libfile-share-perl libfile-sharedir libfile-sharedir-install-perl libyaml-perl liblwp-protocol-https-perl libterm-progressbar-perl
     ```
 
   * Optional

docker/dockerfile

@@ -0,0 +1,24 @@
+# Image with all dependencies for AGAT
+FROM ubuntu:latest
+
+# Needed to avoid to be stuck when installing r-base
+ENV DEBIAN_FRONTEND noninteractive
+
+RUN  apt-get update
+
+RUN apt-get -y install libdb-dev
+
+RUN apt-get -y install r-base
+
+# Perl dependencies
+RUN apt-get -y install libbio-perl-perl libclone-perl libgraph-perl liblwp-useragent-determined-perl libstatistics-r-perl libcarp-clan-perl libsort-naturally-perl libfile-share-perl libfile-sharedir-install-perl libyaml-perl liblwp-protocol-https-perl libfile-sharedir-perl libmoose-perl libterm-progressbar-perl libdevel-cover-perl
+
+# add cpan in case we need to install extra module for test
+#RUN apt-get -y install cpanminus
+
+# add git in case we need to make some debug
+#RUN apt-get -y install git
+
+# add a text editor in case we need to we need to make some debug
+#RUN apt-get -y install nano
+