add test

NBISweden · Jan 10, 2024 · 73b3d74 · 73b3d74
1 parent 7392147
commit 73b3d74
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diff --git a/t/scripts_output.t b/t/scripts_output.t
@@ -603,6 +603,15 @@ system(" $script --gff $input_folder/agat_sp_merge_annotations/fileA.gff  --gff
 ok( system("diff $result $outtmp") == 0, "output $script");
 unlink $outtmp;
 
+# ------------------- check agat_sp_move_attributes_within_records script-------------------
+
+$script = $script_prefix."bin/agat_sp_move_attributes_within_records.pl";
+$result = "$output_folder/agat_sp_move_attributes_within_records.gff";
+system(" $script --gff $input_folder/agat_sp_move_attributes_within_records.gff --fp exon,CDS --fc mRNA -o $outtmp 2>&1 1>/dev/null");
+#run test
+ok( system("diff $result $outtmp") == 0, "output $script");
+unlink $outtmp;
+
 # ------------------- check agat_sp_prokka_fragmented_gene_annotations script-------------------
 
 $script = $script_prefix."bin/agat_sp_prokka_fix_fragmented_gene_annotations.pl";

diff --git a/t/scripts_output/in/agat_sp_move_attributes_within_records.gff b/t/scripts_output/in/agat_sp_move_attributes_within_records.gff
@@ -0,0 +1,3 @@
+ptg000002l	AUGUSTUS	mRNA	3255	4626	0.5	+	.	ID=NBISM00000000001;Parent=NBISG00000000001;Dbxref=CDD:cd07067,Gene3D:G3DSA:3.40.50.1240,InterPro:IPR013078,InterPro:IPR029033,;Name=ARB_03491;Ontology_term=-;makerName=g1.t1;product=Probable phosphoglycerate mutase ARB_03491;uniprot_id=D4B4V1
+ptg000002l	AUGUSTUS	CDS	3255	3275	0.98	+	0	ID=NBISC00000000001;Parent=NBISM00000000001;makerName=g1.t1.CDS1
+
diff --git a/t/scripts_output/out/agat_sp_move_attributes_within_records.gff b/t/scripts_output/out/agat_sp_move_attributes_within_records.gff
@@ -0,0 +1,6 @@
+##gff-version 3
+ptg000002l	AGAT	gene	3255	4626	.	+	.	ID=NBISG00000000001;Dbxref=CDD:cd07067,Gene3D:G3DSA:3.40.50.1240,InterPro:IPR013078,InterPro:IPR029033;Name=ARB_03491;Ontology_term=-;makerName=g1.t1;product=Probable phosphoglycerate mutase ARB_03491;uniprot_id=D4B4V1
+ptg000002l	AUGUSTUS	mRNA	3255	4626	0.5	+	.	ID=NBISM00000000001;Parent=NBISG00000000001;Dbxref=CDD:cd07067,Gene3D:G3DSA:3.40.50.1240,InterPro:IPR013078,InterPro:IPR029033;Name=ARB_03491;Ontology_term=-;makerName=g1.t1;product=Probable phosphoglycerate mutase ARB_03491;uniprot_id=D4B4V1
+ptg000002l	AGAT	exon	3255	4626	.	+	.	ID=agat-exon-1;Parent=NBISM00000000001;Dbxref=CDD:cd07067,Gene3D:G3DSA:3.40.50.1240,InterPro:IPR013078,InterPro:IPR029033;Name=ARB_03491;Ontology_term=-;makerName=g1.t1.CDS1,g1.t1;product=Probable phosphoglycerate mutase ARB_03491;uniprot_id=D4B4V1
+ptg000002l	AUGUSTUS	CDS	3255	3275	0.98	+	0	ID=NBISC00000000001;Parent=NBISM00000000001;Dbxref=CDD:cd07067,Gene3D:G3DSA:3.40.50.1240,InterPro:IPR013078,InterPro:IPR029033;Name=ARB_03491;Ontology_term=-;makerName=g1.t1.CDS1,g1.t1;product=Probable phosphoglycerate mutase ARB_03491;uniprot_id=D4B4V1
+ptg000002l	AGAT	three_prime_UTR	3276	4626	.	+	.	ID=agat-three_prime_utr-1;Parent=NBISM00000000001;makerName=g1.t1.CDS1
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,3 @@
		ptg000002l AUGUSTUS mRNA 3255 4626 0.5 + . ID=NBISM00000000001;Parent=NBISG00000000001;Dbxref=CDD:cd07067,Gene3D:G3DSA:3.40.50.1240,InterPro:IPR013078,InterPro:IPR029033,;Name=ARB_03491;Ontology_term=-;makerName=g1.t1;product=Probable phosphoglycerate mutase ARB_03491;uniprot_id=D4B4V1
		ptg000002l AUGUSTUS CDS 3255 3275 0.98 + 0 ID=NBISC00000000001;Parent=NBISM00000000001;makerName=g1.t1.CDS1