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fix #441 use L3 feature instead to L1 as template to create features when transcript_id exists #442

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merged 5 commits into from
Mar 21, 2024

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Juke34
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@Juke34 Juke34 commented Mar 19, 2024

Otherwise it can mess up with wrong transcript_id

@mschilli87
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@Juke34: Can you give an example of 'messing up' and how one can detect if one is affected? Would be great to know if I better re-build my annotation file and re-analyse all my data due to this bug or if that would be just a huge waste of time.

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Juke34 commented Mar 21, 2024

Hi @mschilli87
The bug concerns only GTF input annotations that have only level3 features (CDS,exons;etc.) and that was output in GTF (GFF output are fine excepted their transcript_id attribute that become wrong but are anyway useless in GFF).
See issue #441 for an example

@Juke34 Juke34 merged commit 2276eb6 into master Mar 21, 2024
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2 participants