Scanpy #2
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| name: Build and Push Scanpy | |
| on: | |
| push: | |
| branches: | |
| - "master" | |
| paths: | |
| - "containers/dockerfiles/scanpy.Dockerfile" | |
| - "containers/scripts/install_scanpy.sh" | |
| - "containers/scripts/reticulate_install_scanpy.R" | |
| workflow_dispatch: | |
| env: | |
| REGISTRY: ghcr.io | |
| IMAGE_NAME: nbisweden/workshop-scrnaseq | |
| IMAGE_TAG: 2023-scanpy-py3.10 | |
| jobs: | |
| scanpy: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| packages: write | |
| id-token: write | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Install cosign | |
| uses: sigstore/cosign-installer@6e04d228eb30da1757ee4e1dd75a0ec73a653e06 #v3.1.1 | |
| with: | |
| cosign-release: 'v2.1.1' | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@f95db51fddba0c2d1ec667646a06c2ce06100226 # v3.0.0 | |
| - name: Log into registry ${{ env.REGISTRY }} | |
| uses: docker/login-action@343f7c4344506bcbf9b4de18042ae17996df046d # v3.0.0 | |
| with: | |
| registry: ${{ env.REGISTRY }} | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Extract Docker metadata | |
| id: meta | |
| uses: docker/metadata-action@96383f45573cb7f253c731d3b3ab81c87ef81934 # v5.0.0 | |
| with: | |
| images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }} | |
| - name: Build and push Docker image | |
| id: build-and-push | |
| uses: docker/build-push-action@0565240e2d4ab88bba5387d719585280857ece09 # v5.0.0 | |
| with: | |
| context: ./containers | |
| file: containers/dockerfiles/scanpy.Dockerfile | |
| tags: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}:${{ env.IMAGE_TAG }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| push: true | |
| - name: Sign the published Docker image | |
| env: | |
| TAGS: ${{ steps.meta.outputs.tags }} | |
| DIGEST: ${{ steps.build-and-push.outputs.digest }} | |
| run: echo "${TAGS}" | xargs -I {} cosign sign --yes {}@${DIGEST} |