WRF shell scripts switch to rundir input.nml

WRF shell scripts now generate links to DART input.nml within run dir, not template directory. Corrects missing updates from setup.csh.
NCAR · Apr 4, 2023 · 63a5748 · 63a5748
1 parent 08aba5e
commit 63a5748
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Showing 5 changed files with 10 additions and 13 deletions.
diff --git a/models/wrf/shell_scripts/diagnostics_obs.csh b/models/wrf/shell_scripts/diagnostics_obs.csh
@@ -17,7 +17,7 @@
   source $paramfile
 
   cd $OBS_DIAG_DIR
-  ${COPY} ${TEMPLATE_DIR}/input.nml.template input.nml
+  ${COPY} ${RUN_DIR}/input.nml input.nml
   set gdate  = (`echo $datea 0 -g | ${DART_DIR}/models/wrf/work/advance_time`)
   set yyyy2  = `echo $datea | cut -b1-4`
   set mm2    = `echo $datea | cut -b5-6`
@@ -95,7 +95,7 @@
 EOF
 
 
-  sed -f script.sed ${TEMPLATE_DIR}/input.nml.template >! input.nml
+  sed -f script.sed ${RUN_DIR}/input.nml >! input.nml
 
   # create the state-space diagnostic summary
 

diff --git a/models/wrf/shell_scripts/gen_retro_icbc.csh b/models/wrf/shell_scripts/gen_retro_icbc.csh
@@ -58,7 +58,7 @@ while ( 1 == 1 )
    if ( ! -d ${OUTPUT_DIR}/${datea} )  mkdir -p ${OUTPUT_DIR}/${datea}
 
    cd ${ICBC_DIR}
-   ${LINK} ${TEMPLATE_DIR}/input.nml.template input.nml
+   ${LINK} ${RUN_DIR}/input.nml input.nml
    ${REMOVE} gfs*pgrb2* *grib2
 
    #  prepare to run WPS ungrib and metgrid

diff --git a/models/wrf/shell_scripts/init_ensemble_var.csh b/models/wrf/shell_scripts/init_ensemble_var.csh
@@ -50,7 +50,6 @@ set dd     = `echo $initial_date | cut -b7-8`
 set hh     = `echo $initial_date | cut -b9-10`
 
 ${COPY} ${TEMPLATE_DIR}/namelist.input.meso namelist.input
-${COPY} ${TEMPLATE_DIR}/input.nml.template input.nml
 ${REMOVE} ${RUN_DIR}/WRF
 ${LINK} ${OUTPUT_DIR}/${initial_date} WRF
 
@@ -61,11 +60,8 @@ while ( $n <= $NUM_ENS )
 
    mkdir -p ${RUN_DIR}/advance_temp${n}
 
-   # TJH why does the run_dir/*/input.nml come from the template_dir and not the rundir?
-   # TJH furthermore, template_dir/input.nml.template and rundir/input.nml are identical. SIMPLIFY.
-
    ${LINK} ${RUN_DIR}/WRF_RUN/* ${RUN_DIR}/advance_temp${n}/.
-   ${LINK} ${TEMPLATE_DIR}/input.nml.template ${RUN_DIR}/advance_temp${n}/input.nml
+   ${LINK} ${RUN_DIR}/input.nml ${RUN_DIR}/advance_temp${n}/input.nml
 
    ${COPY} ${OUTPUT_DIR}/${initial_date}/wrfinput_d01_${gdate[1]}_${gdate[2]}_mean \
            ${RUN_DIR}/advance_temp${n}/wrfvar_output.nc

diff --git a/models/wrf/shell_scripts/new_advance_model.csh b/models/wrf/shell_scripts/new_advance_model.csh
@@ -219,11 +219,12 @@ while($state_copy <= $num_states)     # MULTIPLE DOMAINS - we don't expect advan
 #   endif
 
    # link WRF-runtime files (required) and be.dat (if using WRF-Var)
-     ${LN} ${CENTRALDIR}/WRF_RUN/*       .
-
-   # link DART namelist
-   ${COPY} ${CENTRALDIR}/input.nml       .
+   ${LN} ${CENTRALDIR}/WRF_RUN/*       .
 
+   # Copy DART namelist if necessary
+   if ( ! -e input.nml) then
+      ${COPY} ${CENTRALDIR}/input.nml       .
+   endif
    # append LSM data from previous cycle
    if ( -e ${CENTRALDIR}/append_lsm_data ) then
       ${LN} ${CENTRALDIR}/LSM/lsm_data_${ensemble_member}.nc lsm_data.nc

diff --git a/models/wrf/shell_scripts/setup.csh b/models/wrf/shell_scripts/setup.csh
@@ -89,7 +89,7 @@ ${COPY} ${SHELL_SCRIPTS_DIR}/add_bank_perts.ncl    ${RUN_DIR} || exit 8
 ${COPY} ${SHELL_SCRIPTS_DIR}/new_advance_model.csh ${RUN_DIR} || exit 9
 
 # Edit input.nml.template so that its ens_size is set to the same value as $NUM_ENS in param.csh
-sed "s/ens_size.*/ens_size                 =$NUM_ENS,/g" ${DART_DIR}/models/wrf/tutorial/template/input.nml.template > ${RUN_DIR}/input.nml || exit 8
+sed "s/ens_size.*/ens_size                 =  $NUM_ENS,/g" ${DART_DIR}/models/wrf/tutorial/template/input.nml.template > ${RUN_DIR}/input.nml || exit 8
 
 echo "$myname complete at "`date`
 echo