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updates to mct_driver and nuopc_driver #74

Merged
merged 40 commits into from
Jul 24, 2018
Merged

updates to mct_driver and nuopc_driver #74

merged 40 commits into from
Jul 24, 2018

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mvertens
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@mvertens mvertens commented Jul 12, 2018

Major updates to both caps. New files have been created in both cap directories so that no longer are using the files in coupled_driver/.

- MOM_ocean_model.F90 (corresponds to coupled_driver/ocean_model_MOM.F90)
- MOM_surface_forcing.F90 (corresponds to coupled_driver/MOM_surface_forcing.F90)

Also - for the mct cap have removed the inlining in ocn_comp_mct.F90 code and introduced new copies into ice_ocean_boundary

Note that these changes should result in bfb answers for the mct cap.

Mariana Vertenstein and others added 29 commits February 15, 2018 10:33
…o dev/nuopc

Conflicts:
	config_src/coupled_driver/MOM_surface_forcing.F90
	config_src/mct_driver/ocn_comp_mct.F90
… and MOM_surface_forcing.F90 to mct and nuopc cap codes
@mvertens mvertens requested a review from alperaltuntas July 12, 2018 22:05
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Travis-ci is failing due to trailing spaces in files in both nuopc_driver and mct_driver. see: https://travis-ci.org/NCAR/MOM6/builds/403324645?utm_source=github_status&utm_medium=notification

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@alperaltuntas - I believe I have fixed the trailing spaces.

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I got an error compiling this PR with the mct driver.

/gpfs/fs1/work/altuntas/cesm.sandboxes/cesm2.sbx.mom6/components/mom/MOM6/config_src/coupled_driver/ocean_model_MOM.F90(518): error #6784: The number of actual arguments cannot be greater than the number of dummy arguments.   [CONVERT_IOB_TO_FLUXES]

I made the following changes in mct_driver/MOM_ocean_model.F90 and it compiles fine now. is there a reason why the arguments of the shelf_calc_flux call have changed and calls to add_shelf_forces are removed with this PR? Are there similar changes elsewhere?

--- a/config_src/mct_driver/MOM_ocean_model.F90
+++ b/config_src/mct_driver/MOM_ocean_model.F90
@@ -56,7 +56,7 @@ use MOM_tracer_flow_control, only : call_tracer_flux_init
 use MOM_variables,           only : surface
 use MOM_verticalGrid,        only : verticalGrid_type
 use MOM_ice_shelf,           only : initialize_ice_shelf, shelf_calc_flux, ice_shelf_CS
-use MOM_ice_shelf,           only : ice_shelf_end, ice_shelf_save_restart
+use MOM_ice_shelf,           only : add_shelf_forces, ice_shelf_end, ice_shelf_save_restart
 use coupler_types_mod,       only : coupler_1d_bc_type, coupler_2d_bc_type
 use coupler_types_mod,       only : coupler_type_spawn, coupler_type_write_chksums
 use coupler_types_mod,       only : coupler_type_initialized, coupler_type_copy_data
@@ -472,7 +472,9 @@ subroutine update_ocean_model(Ice_ocean_boundary, OS, Ocean_sfc, &
 
     ! Add ice shelf fluxes
     if (OS%use_ice_shelf) then
-      call shelf_calc_flux(OS%sfc_state, OS%forces, OS%fluxes, OS%Time, time_step, OS%Ice_shelf_CSp)
+      !call shelf_calc_flux(OS%sfc_state, OS%forces, OS%fluxes, OS%Time, time_step, OS%Ice_shelf_CSp)
+      call shelf_calc_flux(OS%sfc_state, OS%fluxes, OS%Time, time_step, OS%Ice_shelf_CSp)
+      call add_shelf_forces(OS%grid, OS%Ice_shelf_CSp, OS%forces)
     endif
 
     ! GMM, check ocean_model_MOM.F90 to enable the following option
@@ -495,7 +497,9 @@ subroutine update_ocean_model(Ice_ocean_boundary, OS, Ocean_sfc, &
                                OS%sfc_state, OS%restore_salinity, OS%restore_temp)
 
     if (OS%use_ice_shelf) then
-      call shelf_calc_flux(OS%sfc_state, OS%forces, OS%flux_tmp, OS%Time, time_step, OS%Ice_shelf_CSp)
+      !call shelf_calc_flux(OS%sfc_state, OS%forces, OS%flux_tmp, OS%Time, time_step, OS%Ice_shelf_CSp)
+      call shelf_calc_flux(OS%sfc_state, OS%flux_tmp, OS%Time, time_step, OS%Ice_shelf_CSp)
+      call add_shelf_forces(OS%grid, OS%Ice_shelf_CSp, OS%forces)
     endif

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mvertens commented Jul 13, 2018 via email

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Mariana,

There are also a few more stylistic issues, such as use statements without only keyword, and lines exceeding 120 characters. I will fix those before merging, but I'd be nice to keep the MOM6 standard in mind for future PRs. See: https://github.com/NOAA-GFDL/MOM6/wiki/Code-style-guide

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mvertens commented Jul 13, 2018 via email

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all b4b so far.

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mvertens commented Jul 13, 2018 via email

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testing: aux_mom on cheyenne/intel. all b4b

@alperaltuntas alperaltuntas merged commit 04845d4 into dev/ncar Jul 24, 2018
@alperaltuntas alperaltuntas deleted the dev/nuopc branch September 17, 2019 20:40
alperaltuntas pushed a commit that referenced this pull request Feb 18, 2022
* additions for stochastic physics and ePBL perts

* cleanup of code and enhancement of ePBL perts

* Update MOM_diabatic_driver.F90

remove conflict with dev/emc

* Update MOM_diabatic_driver.F90

further resolve conflict

* Update MOM_diabatic_driver.F90

put id_sppt_wts, etc back.

* add stochy_restart writing to mom_cap

* additions for stochy restarts

* clean up debug statements

* clean up code

* fix non stochastic ePBL calculation

* re-write of stochastic code to remove CPP directives

* remove blank link in MOM_diagnostics

* clean up MOM_domains

* make stochastics optional

* correct coupled_driver/ocean_model_MOM.F90 and other cleanup

* clean up of code for MOM6 coding standards

* remove stochastics container

* revert MOM_domains.F90

* clean up of mom_ocean_model_nuopc.F90

* remove PE_here from mom_ocean_model_nuopc.F90

* remove debug statements

* stochastic physics re-write

* move stochastics to external directory

* doxygen cleanup

* add write_stoch_restart_ocn to MOM_stochastics

* add logic to remove incrments from restart if outside IAU window

* revert logic wrt increments

* add comments

* update to gfdl 20210806 (#74)

* remove white space and fix comment

* Update MOM_oda_incupd.F90

remove unused index bounds, and fix sum_h2 loop.

Co-authored-by: pjpegion <Philip.Pegion@noaa.gov>
Co-authored-by: Marshall Ward <marshall.ward@noaa.gov>

* Fussing with zotero.bib.

Getting a warning about a repeated bibliography entry for adcroft2004.
Rob thinks this is a hash failure.

* Still fussing with zotero.bib

- it was complaining about the (unused) Kasahara reference.

* Several little things, one is making sponge less verbose.

- Pointing to OBC wiki file from the lateral parameterizations doc.

- Using the MOM6 verbosity to control the time_interp verbosity.

- Making the check for negative water depths more informative.

* return a more accurate error message in MOM_stochasics

* Working on boundary layer docs.

* Done with EPBL docs?

* Undoing some patches from others

* Cleaning up too-new commits

* Adding in that SAL commit again.

* correction on type in directory name

* Added some to vertical viscisity doc.

* Cleaned up whitespace leftover from porous topomerge.

- Spacing within expressions was uneven and made multiplation look like
  POW functions. Leftover from merging NOAA-GFDL#3.
- No answer changes.

* Fix out-of-bounds k index in PPM flux

- An errant use of the porous face area led to an out-of-bounds k-index
  reported in NOAA-GFDL#19.
- Closes #19

* Adding Channel drag figure

* Take cite out of figure caption.

* Copyright year 2022
alperaltuntas pushed a commit that referenced this pull request May 19, 2022
* remove white space and fix comment

* Update MOM_oda_incupd.F90

remove unused index bounds, and fix sum_h2 loop.

Co-authored-by: pjpegion <Philip.Pegion@noaa.gov>
Co-authored-by: Marshall Ward <marshall.ward@noaa.gov>
alperaltuntas pushed a commit that referenced this pull request Jun 3, 2022
* remove white space and fix comment

* Update MOM_oda_incupd.F90

remove unused index bounds, and fix sum_h2 loop.

Co-authored-by: pjpegion <Philip.Pegion@noaa.gov>
Co-authored-by: Marshall Ward <marshall.ward@noaa.gov>
alperaltuntas pushed a commit that referenced this pull request Jun 3, 2022
alperaltuntas pushed a commit that referenced this pull request Jun 3, 2022
* remove white space and fix comment

* Update MOM_oda_incupd.F90

remove unused index bounds, and fix sum_h2 loop.

Co-authored-by: pjpegion <Philip.Pegion@noaa.gov>
Co-authored-by: Marshall Ward <marshall.ward@noaa.gov>
alperaltuntas pushed a commit that referenced this pull request Jun 3, 2022
Note that most of these commits are from previously squashed pull
requests, and this PR is restoring them.

- 6360dbb Merge branch 'main' into main_to_dev
- bac8031 Merge pull request mom-ocean#1566 from jiandewang/EMC-FMS-mixed-mode-20220411
- e532d86 Merge pull request #88 from marshallward/missing_attrib_with_class_bugfix
- d380f1d An alternate fix to class(*) issues with FMS 2022-01
- 8ecf333 Merge pull request #87 from jiandewang/feature/update-to-main-20220317
- ba37f94 Merge remote-tracking branch 'FSU/main' into feature/update-to-main-20220317 this is corresponding to MOM6 main 20220317 commit (hash # 399a7db)
- 44313d9 Merge pull request #85 from jiandewang/feature/update-to-main-20220217
- 966707f Merge remote-tracking branch 'GFDL/main' into feature/update-to-main-20220217 this is corresponding to MOM6 main branch 20220217 commit (hash # 6f6d4d6), which originally based on GFDL-candidate-20220129
- 32c0e1e Merge pull request #81 from jiandewang/feature/update-to-main-20211220
- 9642b1d delete external/OCEAN_stochastic_phyiscs directory as Phil re-coded in external/stochastic_physics directory
- e7c9ada solve minor conflict in mom_cap.F90 mom_ocean_model_nuopc.F90 and MOM_energetic_PBL.F90, add two new files: src/parameterizations/stochastic/MOM_stochastics.F90 and config_src/external/stochastic_physics/stochastic_physics.F90
- 90d5961 Merge pull request #78 from jiandewang/feature/update-to-GFDL-20211019
- fd02017 Merge remote-tracking branch 'GFDL/main' into feature/update-to-GFDL-20211019
- 36f17eb Merge pull request #72 from pjpegion/ocn_stoch_july2021
- a9a957e return a more accurate error message in MOM_stochasics
- 56bb41e Merge branch 'ocn_stoch_july2021' of https://github.com/pjpegion/MOM6 into ocn_stoch_july2021
- ca2ae1c update to dev/emc
- 14ca4a1 Merge pull request #76 from jiandewang/feature/update-to-GFDL-20210914
- 29016c2 Merge remote-tracking branch 'GFDL/main' into feature/update-to-GFDL-20210914 merge GFDL main 20210914 commit (hash # c09e199)
- a8577df Merge branch 'NOAA-EMC:dev/emc' into ocn_stoch_july2021
- f8a8e4c update to gfdl 20210806 (#74)
- 16e6af0 update to dev/emc
- 237a510 add comments
- 1b4273d revert logic wrt increments
- 5b2040e add logic to remove incrments from restart if outside IAU window
- c5f2b72 add write_stoch_restart_ocn to MOM_stochastics
- bdf2dc7 doxygen cleanup
- 8bc4acc move stochastics to external directory
- a3fa3a1 Merge remote-tracking branch 'upstream/dev/emc' into ocn_stoch_july2021
- e4bc007 stochastic physics re-write
- 202cbd4 update to dev/emc
- 61717ee Merge remote-tracking branch 'origin/dev/emc' into ocn_stoch
- 565e0bb remove debug statements
- a4c0411 Merge remote-tracking branch 'upstream/dev/emc' into ocn_stoch
- 689a73f remove PE_here from mom_ocean_model_nuopc.F90
- 8afe969 clean up of mom_ocean_model_nuopc.F90
- 25ed4fc revert MOM_domains.F90
- b8d9888 place stochastic array in fluxes container and make SPPT specific arrays allocatable
- d984a7e remove stochastics container
- eb88219 clean up of code for MOM6 coding standards
- 6e3ea1b correct coupled_driver/ocean_model_MOM.F90 and other cleanup
- 0b99c1f make stochastics optional
- 85023f8 Merge remote-tracking branch 'upstream/dev/emc' into ocn_stoch
- 80f9f44 clean up MOM_domains
- 5443f8e remove blank link in MOM_diagnostics
- 1727d9a re-write of stochastic code to remove CPP directives
- 600ebf9 Merge remote-tracking branch 'upstream/dev/emc' into ocn_stoch
- 6bb9d0b fix non stochastic ePBL calculation
- 1d7ffa3 clean up code
- 040e1f1 Merge pull request #13 from NOAA-EMC/dev/emc
- 2cba995 Merge branch 'dev/emc' into ocn_stoch
- 1dc0f4f Merge remote-tracking branch 'upstream/dev/emc' into dev/emc
- 4bd9b9e clean up debug statements
- 25ed5ef additions for stochy restarts
- a2a374b add stochy_restart writing to mom_cap
- 0c15f4c Update MOM_diabatic_driver.F90
- 167a62e Merge pull request #12 from pjpegion/dev/emc
- bd477a9 Update MOM_diabatic_driver.F90
- 7212400 Update MOM_diabatic_driver.F90
- 7de295c cleanup of code and enhancement of ePBL perts
- cd06356 Merge pull request #11 from NOAA-EMC/dev/emc
- 9896d61 Merge pull request #9 from pjpegion/dev/emc_merge
- 0a62737 Merge branch 'ocn_stoch' into dev/emc_merge
- 3cad1ba Merge pull request #8 from NOAA-EMC/dev/emc
- c2aa2a8 updates from dev/emc
- 182ef34 additions for stochastic physics and ePBL perts
- 671c714 Merge pull request #1 from NOAA-EMC/dev/emc
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4 participants