NCCR-SYNAPSY: Neuroimaging Data Management Training Resources

Collection of training resources to support the standardization of neuroimaging data inside NCCR SYNAPSY

Presentations

Monday, 08 March 2021

• Introduction to BIDS and Datalad (view RevealJS / PDF)

Wednesday, 21 April 2021

• Standardization of neuroimaging (MRI/EEG) data inside Synapsy (view RevealJS / PDF)

Tuesday, 31 August 2021

• SYNAPSY neuroimaging data management plan: a Recap (view RevealJS / PDF)

• A BIDS MRI dataset usacase: SYNAPSY early-psychosis dataset (view RevealJS / PDF)

• Introduction to NeuroDataPub (view RevealJS / PDF)

Thursday, 14 October 2021 - Annual Meeting in Les Diablerets

• Standardization of Neuroimaging Data Management inside Synapsy (view RevealJS)

Recommended tutorials

• From DICOM to BIDS dataset using Heudiconv (by James Kent): https://www.youtube.com/watch?v=O1kZAuR7E00

• Introduction to Datalad (by Adina Wagner): https://www.youtube.com/watch?v=QsAqnP7TwyY

Other great resources

• Training modules by the ReproNim Team (https://www.repronim.org/teach.html):

  • Reproducibility Basics Module (http://www.repronim.org/module-reproducible-basics/) to learn more about core tools such as shell, version control, etc. and how these tools could promote reproducibility in your research

  • Data and the FAIR principles Module (http://www.repronim.org/module-FAIR-data/) to learn more about FAIR and BIDS

• Lessons by Software Carpentry (https://software-carpentry.org/lessons/) about basic lab skills for research computing such as the "Version Control with Git" lesson (https://swcarpentry.github.io/git-novice/)

Need help?

Please create a new discussion with your question in Discussions.

Authors

• Sebastien Tourbier (@sebastientourbier), Connectomics Lab, Lausanne University and Hospital Center (UNIL_CHUV), Switzerland

License

CC-BY-4.0 licensed

Copyright (C) 2021 Lausanne University and Hospital Center (UNIL_CHUV), Switzerland