Skip to content

Commit

Permalink
docs: fix broken link for hg38 fasta
Browse files Browse the repository at this point in the history
  • Loading branch information
jaamarks authored Aug 23, 2024
1 parent 85c3f43 commit 7f89681
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion docs/getting_started/configuration.rst
Original file line number Diff line number Diff line change
Expand Up @@ -77,7 +77,7 @@ The ``reference_fasta`` is used convert GTCs to VCF and needed if GTCs are provi
reference fasta download links
* **hg37**: `fasta <https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.25_GRCh37.p13/GRCh37_seqs_for_alignment_pipelines/GCA_000001405.14_GRCh37.p13_full_analysis_set.fna.gz>`__

* **hg38**: `fasta <https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fftp.ncbi.nlm.nih.gov%2Fgenomes%2Fall%2FGCF%2F000%2F001%2F405%2FGCF_000001405.26_GRCh38%2FGRCh38_major_release_seqs_for_alignment_pipelines%2FGCA_000001405.15_GRCh38_full_analysis_set.fna.gz&data=05%7C02%7Ccdwillis%40rti.org%7C16dafc3de4c243d08b8f08dc99ce6157%7C2ffc2ede4d4449948082487341fa43fb%7C0%7C0%7C638554358914493874%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=KF7KD9mFUHu2mILsEb8TAEi%2F4Q%2FDEaa5my50nNKzcdw%3D&reserved=0>`__
* **hg38**: `fasta <https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.26_GRCh38/GRCh38_major_release_seqs_for_alignment_pipelines/GCA_000001405.15_GRCh38_full_analysis_set.fna.gz>`__

After downloading the reference fasta, it needs to be converted from gz format to bgz format. This can be done with:

Expand Down

0 comments on commit 7f89681

Please sign in to comment.