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Ancestry = "Unknown" not shown in Table 3 Subject Counts by Ancestry Group #281

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1teaspoon opened this issue Apr 30, 2024 · 3 comments · Fixed by #290
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Ancestry = "Unknown" not shown in Table 3 Subject Counts by Ancestry Group #281

1teaspoon opened this issue Apr 30, 2024 · 3 comments · Fixed by #290
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@carynwillis
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@1teaspoon
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@1teaspoon
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ancestry assignment by graf-pop

@kliao12 kliao12 self-assigned this May 2, 2024
@kliao12 kliao12 mentioned this issue May 24, 2024
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@kliao12 kliao12 linked a pull request May 24, 2024 that will close this issue
281 ancestry = unknown not shown in table 3 subject counts by ancestry group #290
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@1teaspoon 1teaspoon reopened this Sep 3, 2024
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"Other" needs to be populated in sample_qc.csv so that subject_qc.csv have this ancestry info and the pca and hwe plots will be generated for this ancestry group.

@carynwillis carynwillis self-assigned this Oct 15, 2024
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Closing as a duplicate of issue #326 which has been completed and closed.

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281 ancestry = unknown not shown in table 3 subject counts by ancestry group NCI-CGR/GwasQcPipeline
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@kliao12 @1teaspoon @carynwillis