Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

switch snp and call rate filters #305

Merged
merged 3 commits into from
Jul 5, 2024
Merged

switch snp and call rate filters #305

merged 3 commits into from
Jul 5, 2024

Conversation

kliao12
Copy link
Contributor

@kliao12 kliao12 commented Jul 1, 2024

Switch SNP and sample call rate filters for both 1 and 2 thresholds. Also update input for subsequent tasks based on newly updated sample plink files.

fix #288

New DAG:
image

Previous sample and loci count in n=500 testing dataset:
image

Updated sample and loci count in n=500 testing dataset:
image

@kliao12 kliao12 linked an issue Jul 1, 2024 that may be closed by this pull request
@kliao12 kliao12 merged commit 3c5793e into default Jul 5, 2024
2 checks passed
@kliao12 kliao12 deleted the 288-call-rate-filter branch July 6, 2024 12:38
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

call rate filter
1 participant