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report: Remove the sentence about low replicate concordance (issue #353) #354

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merged 1 commit into from
Nov 20, 2024

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@jaamarks jaamarks commented Nov 14, 2024

What
Remove the sentence "We removed {{ sample_qc.expected_replicates.num_low_concordance | numFormat }} study samples with low replicate concordance." from the QC_Report.docx. Discordant Replicates section 3.5.1.

Why
We are not actually removing them from the pipeline. For example, if you look in "Table 4a Summary of sample level exclusions" there is no row for mentioning removing these samples.

Fixes #353

@jaamarks jaamarks merged commit eec2191 into NCI-CGR:default Nov 20, 2024
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