HYSPLIT input support

bsubScripts/ncum_global_2p5/ncum_global_2p5_um2grb2_setup.cfg

@@ -49,7 +49,7 @@ UMInAnlFiles = ['qwqg00.pp0']
 ## UMInShortFcstFiles takes list of partial filenames which has short forecast 
 ## (kind of analysis) fieldsfile/pp files of UM model produced for 00UTC, 06UTC, 12UTC, 18UTC.
 ## None option will take hardcoded proper infile names.
-UMInShortFcstFiles = ['umglca_pb', 'umglca_pd', 'umglca_pe', 'umglca_pf', 'umglca_pi']
+UMInShortFcstFiles = ['umglc.pp0', 'umglca_pb', 'umglca_pd', 'umglca_pe', 'umglca_pf', 'umglca_pi']
 
 ## UMInLongFcstFiles takes list of partial filenames which has long forecast 
 ## fieldsfile/pp file of UM model based on reference time at 00UTC, 12UTC.

bsubScripts/ncum_global_hysplit_input/REAMDE.md

@@ -0,0 +1,25 @@
+This will produce analysis 00utc files.
+
+$ bsub < ncum_global_hysplit_input_anl_00Z.bash
+
+This will produce analysis 06utc files.
+
+$ bsub < ncum_global_hysplit_input_anl_06Z.bash
+
+This will produce analysis 12utc files.
+
+$ bsub < ncum_global_hysplit_input_anl_12Z.bash
+
+This will produce analysis 18utc files.
+
+$ bsub < ncum_global_hysplit_input_anl_18Z.bash
+
+This will produce forecast 00utc files.
+
+$ bsub < ncum_global_hysplit_input_fcst_00Z.bash
+
+This will produce forecast-fluxes 00utc files.
+
+$ bsub < ncum_global_hysplit_input_flux_00Z.bash
+
+Arulalan.T

bsubScripts/ncum_global_hysplit_input/ncum_global_hysplit_input_anl_00Z.bash

@@ -0,0 +1,37 @@
+#!/bin/bash
+#
+#BSUB -a poe                  # set parallel operating environment
+#BSUB -J u2g2hysplit              # job name
+#BSUB -W 06:00                # wall-clock time (hrs:mins)
+#BSUB -n 6                    # number of tasks in job
+#BSUB -x                      # exclusive mode
+#BSUB -q ultra                # queue
+#BSUB -e /gpfs3/home/umfcst/UMRiderLogs/hysplit/bsub/um2grb2.anl.00hr.err.%J.hybrid     # error file name in which %J is replaced by the job ID
+#BSUB -o /gpfs3/home/umfcst/UMRiderLogs/hysplit/bsub/um2grb2.anl.00hr.out.%J.hybrid     # output file name in which %J is replaced by the job ID
+
+# find out the directory of this bash script after submitted to bsub
+DIR="$( cd "$( dirname "${BASH_SOURCE[1]}" )" && pwd )"
+
+# get the absolute path of the local table 
+localTable_relative_dir="$DIR/../../tables/local/ncmr/v1/"
+localTable_absolute_dir="$( cd "$localTable_relative_dir" && pwd )"
+localTable=$localTable_absolute_dir/ncmr_grib2_local_table
+
+# get the absolute path of the script for analysis 00utc
+g2scripts_relative_dir="$DIR/../../g2scripts/"
+g2scripts_absolute_dir="$( cd "$g2scripts_relative_dir" && pwd )"
+g2script=$g2scripts_absolute_dir/um2grb2_anl_00Z.py
+
+# export the configure paths to needed variables
+export UMRIDER_SETUP=$DIR/ncum_global_hysplit_input_um2grb2_setup.cfg
+export UMRIDER_VARS=$DIR/ncum_global_hysplit_input_um2grb2_anl_vars.cfg
+export GRIB2TABLE=$localTable
+
+echo "export UMRIDER_SETUP="$UMRIDER_SETUP
+echo "export UMRIDER_VARS="$UMRIDER_VARS
+echo "export GRIB2TABLE="$GRIB2TABLE
+
+# sourcing umtid_bashrc to load module python-uvcdat-iris!
+source "$DIR/../umtid_bashrc"
+# execute the script
+python $g2script

bsubScripts/ncum_global_hysplit_input/ncum_global_hysplit_input_anl_06Z.bash

@@ -0,0 +1,38 @@
+#!/bin/bash
+#
+#BSUB -a poe                  # set parallel operating environment
+#BSUB -J u2g2hysplit              # job name
+#BSUB -W 06:00                # wall-clock time (hrs:mins)
+#BSUB -n 4                    # number of tasks in job
+#BSUB -x                      # exclusive mode
+#BSUB -q ultra                # queue
+#BSUB -e /gpfs3/home/umfcst/UMRiderLogs/hysplit/bsub/um2grb2.anl.06hr.err.%J.hybrid     # error file name in which %J is replaced by the job ID
+#BSUB -o /gpfs3/home/umfcst/UMRiderLogs/hysplit/bsub/um2grb2.anl.06hr.out.%J.hybrid     # output file name in which %J is replaced by the job ID
+
+# find out the directory of this bash script after submitted to bsub
+DIR="$( cd "$( dirname "${BASH_SOURCE[1]}" )" && pwd )"
+
+# get the absolute path of the local table 
+localTable_relative_dir="$DIR/../../tables/local/ncmr/v1/"
+localTable_absolute_dir="$( cd "$localTable_relative_dir" && pwd )"
+localTable=$localTable_absolute_dir/ncmr_grib2_local_table
+
+# get the absolute path of the script for analysis 06utc
+g2scripts_relative_dir="$DIR/../../g2scripts/"
+g2scripts_absolute_dir="$( cd "$g2scripts_relative_dir" && pwd )"
+g2script=$g2scripts_absolute_dir/um2grb2_anl_06Z.py
+
+# export the configure paths to needed variables
+export UMRIDER_SETUP=$DIR/ncum_global_hysplit_input_um2grb2_setup.cfg
+export UMRIDER_VARS=$DIR/ncum_global_hysplit_input_um2grb2_anl_vars.cfg
+export GRIB2TABLE=$localTable
+
+echo "export UMRIDER_SETUP="$UMRIDER_SETUP
+echo "export UMRIDER_VARS="$UMRIDER_VARS
+echo "export GRIB2TABLE="$GRIB2TABLE
+
+# sourcing umtid_bashrc to load module python-uvcdat-iris!
+source "$DIR/../umtid_bashrc"
+# execute the script
+python $g2script
+

bsubScripts/ncum_global_hysplit_input/ncum_global_hysplit_input_anl_12Z.bash

@@ -0,0 +1,38 @@
+#!/bin/bash
+#
+#BSUB -a poe                  # set parallel operating environment
+#BSUB -J u2g2hysplit              # job name
+#BSUB -W 06:00                # wall-clock time (hrs:mins)
+#BSUB -n 4                    # number of tasks in job
+#BSUB -x                      # exclusive mode
+#BSUB -q ultra                # queue
+#BSUB -e /gpfs3/home/umfcst/UMRiderLogs/hysplit/bsub/um2grb2.anl.12hr.err.%J.hybrid     # error file name in which %J is replaced by the job ID
+#BSUB -o /gpfs3/home/umfcst/UMRiderLogs/hysplit/bsub/um2grb2.anl.12hr.out.%J.hybrid     # output file name in which %J is replaced by the job ID
+
+# find out the directory of this bash script after submitted to bsub
+DIR="$( cd "$( dirname "${BASH_SOURCE[1]}" )" && pwd )"
+
+# get the absolute path of the local table 
+localTable_relative_dir="$DIR/../../tables/local/ncmr/v1/"
+localTable_absolute_dir="$( cd "$localTable_relative_dir" && pwd )"
+localTable=$localTable_absolute_dir/ncmr_grib2_local_table
+
+# get the absolute path of the script for analysis 12utc
+g2scripts_relative_dir="$DIR/../../g2scripts/"
+g2scripts_absolute_dir="$( cd "$g2scripts_relative_dir" && pwd )"
+g2script=$g2scripts_absolute_dir/um2grb2_anl_12Z.py
+
+# export the configure paths to needed variables
+export UMRIDER_SETUP=$DIR/ncum_global_hysplit_input_um2grb2_setup.cfg
+export UMRIDER_VARS=$DIR/ncum_global_hysplit_input_um2grb2_anl_vars.cfg
+export GRIB2TABLE=$localTable
+
+echo "export UMRIDER_SETUP="$UMRIDER_SETUP
+echo "export UMRIDER_VARS="$UMRIDER_VARS
+echo "export GRIB2TABLE="$GRIB2TABLE
+
+# sourcing umtid_bashrc to load module python-uvcdat-iris!
+source "$DIR/../umtid_bashrc"
+# execute the script
+python $g2script
+

bsubScripts/ncum_global_hysplit_input/ncum_global_hysplit_input_anl_18Z.bash

@@ -0,0 +1,38 @@
+#!/bin/bash
+#
+#BSUB -a poe                  # set parallel operating environment
+#BSUB -J u2g2hysplit              # job name
+#BSUB -W 06:00                # wall-clock time (hrs:mins)
+#BSUB -n 4                    # number of tasks in job
+#BSUB -x                      # exclusive mode
+#BSUB -q ultra                # queue
+#BSUB -e /gpfs3/home/umfcst/UMRiderLogs/hysplit/bsub/um2grb2.anl.18hr.err.%J.hybrid     # error file name in which %J is replaced by the job ID
+#BSUB -o /gpfs3/home/umfcst/UMRiderLogs/hysplit/bsub/um2grb2.anl.18hr.out.%J.hybrid     # output file name in which %J is replaced by the job ID
+
+# find out the directory of this bash script after submitted to bsub
+DIR="$( cd "$( dirname "${BASH_SOURCE[1]}" )" && pwd )"
+
+# get the absolute path of the local table 
+localTable_relative_dir="$DIR/../../tables/local/ncmr/v1/"
+localTable_absolute_dir="$( cd "$localTable_relative_dir" && pwd )"
+localTable=$localTable_absolute_dir/ncmr_grib2_local_table
+
+# get the absolute path of the script for analysis 18utc
+g2scripts_relative_dir="$DIR/../../g2scripts/"
+g2scripts_absolute_dir="$( cd "$g2scripts_relative_dir" && pwd )"
+g2script=$g2scripts_absolute_dir/um2grb2_anl_18Z.py
+
+# export the configure paths to needed variables
+export UMRIDER_SETUP=$DIR/ncum_global_hysplit_input_um2grb2_setup.cfg
+export UMRIDER_VARS=$DIR/ncum_global_hysplit_input_um2grb2_anl_vars.cfg
+export GRIB2TABLE=$localTable
+
+echo "export UMRIDER_SETUP="$UMRIDER_SETUP
+echo "export UMRIDER_VARS="$UMRIDER_VARS
+echo "export GRIB2TABLE="$GRIB2TABLE
+
+# sourcing umtid_bashrc to load module python-uvcdat-iris!
+source "$DIR/../umtid_bashrc"
+# execute the script
+python $g2script
+

bsubScripts/ncum_global_hysplit_input/ncum_global_hysplit_input_fcst_00Z.bash

@@ -0,0 +1,39 @@
+#!/bin/bash
+#
+#BSUB -a poe                  # set parallel operating environment
+#BSUB -J u2g2hysplit              # job name
+#BSUB -W 06:00                # wall-clock time (hrs:mins)
+#BSUB -n 16                   # number of tasks in job (max task in one node)
+#BSUB -x                      # exclusive mode
+#BSUB -R span[ptile=16]       # task per node 
+#BSUB -q ultra             	  # queue
+#BSUB -e /gpfs3/home/umfcst/UMRiderLogs/hysplit/bsub/um2grb2.fcst.00hr.err.%J.hybrid     # error file name in which %J is replaced by the job ID
+#BSUB -o /gpfs3/home/umfcst/UMRiderLogs/hysplit/bsub/um2grb2.fcst.00hr.out.%J.hybrid     # output file name in which %J is replaced by the job ID
+
+# find out the directory of this bash script after submitted to bsub
+DIR="$( cd "$( dirname "${BASH_SOURCE[1]}" )" && pwd )"
+
+# get the absolute path of the local table 
+localTable_relative_dir="$DIR/../../tables/local/ncmr/v1/"
+localTable_absolute_dir="$( cd "$localTable_relative_dir" && pwd )"
+localTable=$localTable_absolute_dir/ncmr_grib2_local_table
+
+# get the absolute path of the script for forecast 00utc
+g2scripts_relative_dir="$DIR/../../g2scripts/"
+g2scripts_absolute_dir="$( cd "$g2scripts_relative_dir" && pwd )"
+g2script=$g2scripts_absolute_dir/um2grb2_fcst_00Z.py
+
+# export the configure paths to needed variables
+export UMRIDER_SETUP=$DIR/ncum_global_hysplit_input_um2grb2_setup.cfg
+export UMRIDER_VARS=$DIR/ncum_global_hysplit_input_um2grb2_fcst_vars.cfg
+export GRIB2TABLE=$localTable
+
+echo "export UMRIDER_SETUP="$UMRIDER_SETUP
+echo "export UMRIDER_VARS="$UMRIDER_VARS
+echo "export GRIB2TABLE="$GRIB2TABLE
+
+# sourcing umtid_bashrc to load module python-uvcdat-iris!
+source "$DIR/../umtid_bashrc"
+# execute the script
+python $g2script
+

bsubScripts/ncum_global_hysplit_input/ncum_global_hysplit_input_um2grb2_anl_vars.cfg

@@ -0,0 +1,31 @@
+##############################################################################
+## vars configure file: Used for the purpose of um2grb2 conversion of only  ##
+## needed NCUM model out variables. um2grb2 python parallel scripts will    ##
+## create analysis and forecast files, by conveting to gri2 file only for   ##
+## for the following cf_standard_name and varSTASH coded vars.              ##
+##                                                                          ##
+##  NCUM GLOBAL MODEL OSF INPUT PREPARATION PROCESSING VARS CONFIGURE FILE  ##
+##                                                                          ##
+## Author : Arulalan <arulalan@ncmrwf.gov.in>                               ##
+## Updated : 25-May-2017                                                    ##
+##############################################################################
+
+##### BEGIN OF UMRIDER VARS CONFIGURE FOR um2grb2 SCRIPTS ######
+## Pressure Level Variable names & STASH codes
+('x_wind', 'm01s15i201')
+('y_wind', 'm01s15i202')   
+('geopotential_height', 'm01s16i202') 
+# Instead of ('surface_altitude', 'm01s00i033') i.e. orography, model needs to written as below.
+('surface_geopotential_height', 'm01s00i033')
+('relative_humidity', 'm01s16i256')
+('specific_humidity', 'm01s30i205')   
+('air_temperature', 'm01s16i203')
+('upward_air_velocity_in_pascal', 'm01s15i242')
+## Non Pressure Level Variable names & STASH codes
+('x_wind', 'm01s03i225')
+('y_wind', 'm01s03i226')
+('air_temperature', 'm01s03i236')
+('specific_humidity', 'm01s03i237')
+('surface_air_pressure', 'm01s00i409')
+('atmosphere_boundary_layer_thickness', 'm01s00i025')
+##### END OF UMRIDER VARS CONFIGURE um2grb2 SCRIPTS ######

bsubScripts/ncum_global_hysplit_input/ncum_global_hysplit_input_um2grb2_fcst_vars.cfg

@@ -0,0 +1,31 @@
+##############################################################################
+## vars configure file: Used for the purpose of um2grb2 conversion of only  ##
+## needed NCUM model out variables. um2grb2 python parallel scripts will    ##
+## create analysis and forecast files, by conveting to gri2 file only for   ##
+## for the following cf_standard_name and varSTASH coded vars.              ##
+##                                                                          ##
+##  NCUM GLOBAL MODEL OSF INPUT PREPARATION PROCESSING VARS CONFIGURE FILE  ##
+##                                                                          ##
+## Author : Arulalan <arulalan@ncmrwf.gov.in>                               ##
+## Updated : 25-May-2017                                                    ##
+##############################################################################
+
+##### BEGIN OF UMRIDER VARS CONFIGURE FOR um2grb2 SCRIPTS ######
+## Pressure Level Variable names & STASH codes
+('x_wind', 'm01s15i201')
+('y_wind', 'm01s15i202')   
+('geopotential_height', 'm01s16i202') 
+# Instead of ('surface_altitude', 'm01s00i033') i.e. orography, model needs to written as below.
+##('surface_geopotential_height', 'm01s00i033') # not avilable for fcst.
+('relative_humidity', 'm01s16i256')
+('specific_humidity', 'm01s30i205')   
+('air_temperature', 'm01s16i203')
+('upward_air_velocity_in_pascal', 'm01s15i242')
+## Non Pressure Level Variable names & STASH codes
+('x_wind', 'm01s03i225')
+('y_wind', 'm01s03i226')
+('air_temperature', 'm01s03i236')
+('specific_humidity', 'm01s03i237')
+('surface_air_pressure', 'm01s00i409')
+('atmosphere_boundary_layer_thickness', 'm01s00i025')
+##### END OF UMRIDER VARS CONFIGURE um2grb2 SCRIPTS ######