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This PR:
- updates the snowDA yamls to jinja2 templates removing all `$( )` and
`${ }` template forms.
- all inclusion is now performed via jinja2 `include` with the
appropriate indentation.
- jinja2 templates for yamls now carry a `.j2` extension to identify
them as templates.
- requires `feature/jinja2_includes` branch from `wxflow`.
`parse_j2yaml` from `wxflow` now does not render the `$( )` templates.
This change is **not** backwards compatible.
Corressponding PRs in `wxflow` and `global-workflow` are:
- NOAA-EMC/wxflow#15
- NOAA-EMC/global-workflow#2371- Loading branch information
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,35 @@ | ||
| time window: | ||
| begin: '{{ SNOW_WINDOW_BEGIN | to_isotime }}' | ||
| length: {{ SNOW_WINDOW_LENGTH }} | ||
| geometry: | ||
| fms initialization: | ||
| namelist filename: '{{ DATA }}/fv3jedi/fmsmpp.nml' | ||
| field table filename: '{{ DATA }}/fv3jedi/field_table' | ||
| akbk: '{{ DATA }}/fv3jedi/akbk.nc4' | ||
| layout: | ||
| - {{ layout_x }} | ||
| - {{ layout_y }} | ||
| npx: {{ npx_ges }} | ||
| npy: {{ npy_ges }} | ||
| npz: {{ npz_ges }} | ||
| field metadata override: '{{ DATA }}/fv3jedi/fv3jedi_fieldmetadata_restart.yaml' | ||
| time invariant fields: | ||
| state fields: | ||
| datetime: '{{ SNOW_WINDOW_BEGIN | to_isotime }}' | ||
| filetype: fms restart | ||
| skip coupler file: true | ||
| state variables: [orog_filt] | ||
| datapath: '{{ FIXgfs }}/fix_orog/{{ CASE }}/' | ||
| filename_orog: '{{ CASE }}_oro_data.nc' | ||
| state: | ||
| datapath: '{{ DATA }}/bkg' | ||
| filetype: fms restart | ||
| datetime: '{{ current_cycle | to_isotime }}' | ||
| filename_sfcd: '{{ current_cycle | to_fv3time }}.sfc_data.nc' | ||
| filename_cplr: '{{ current_cycle | to_fv3time }}.coupler.res' | ||
| state variables: [snwdph,vtype,slmsk] | ||
| observations: | ||
| {% filter indent(width=2) %} | ||
| {% set snow_obs_list = 'OBS_LIST' | getenv('snow/obs/lists/gdas_snow.yaml.j2') %} | ||
| {% include snow_obs_list %} | ||
| {% endfilter %} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,109 @@ | ||
| - obs space: | ||
| name: adpsfc_snow | ||
| distribution: | ||
| name: Halo | ||
| halo size: 250e3 | ||
| obsdatain: | ||
| engine: | ||
| type: H5File | ||
| obsfile: '{{ DATA }}/obs/{{ OPREFIX }}adpsfc_snow.nc4' | ||
| obsdataout: | ||
| engine: | ||
| type: H5File | ||
| obsfile: '{{ DATA }}/diags/diag_adpsfc_snow.nc4' | ||
| simulated variables: [totalSnowDepth] | ||
| obs operator: | ||
| name: Composite | ||
| components: | ||
| - name: Identity | ||
| - name: BackgroundErrorIdentity | ||
| obs error: | ||
| covariance model: diagonal | ||
| obs localizations: | ||
| - localization method: Horizontal SOAR | ||
| lengthscale: 250e3 | ||
| soar horizontal decay: 0.000021 | ||
| max nobs: 50 | ||
| - localization method: Vertical Brasnett | ||
| vertical lengthscale: 700 | ||
| obs pre filters: | ||
| - filter: Perform Action | ||
| filter variables: | ||
| - name: totalSnowDepth | ||
| action: | ||
| name: assign error | ||
| error parameter: 40.0 | ||
| - filter: Variable Assignment | ||
| assignments: | ||
| - name: GrossErrorProbability/totalSnowDepth | ||
| type: float | ||
| value: 0.02 | ||
| - name: BkgError/totalSnowDepth_background_error | ||
| type: float | ||
| value: 30.0 | ||
| obs prior filters: | ||
| - filter: Bounds Check | ||
| filter variables: | ||
| - name: totalSnowDepth | ||
| minvalue: 0.0 | ||
| maxvalue: 2000.0 | ||
| action: | ||
| name: reject | ||
| - filter: Domain Check | ||
| where: | ||
| - variable: | ||
| name: MetaData/stationElevation | ||
| minvalue: -999.0 | ||
| - filter: Domain Check # land only | ||
| where: | ||
| - variable: | ||
| name: GeoVaLs/slmsk | ||
| minvalue: 0.5 | ||
| maxvalue: 1.5 | ||
| - filter: RejectList # no land-ice | ||
| where: | ||
| - variable: | ||
| name: GeoVaLs/vtype | ||
| minvalue: 14.5 | ||
| maxvalue: 15.5 | ||
| - filter: BlackList | ||
| where: | ||
| - variable: | ||
| name: MetaData/stationIdentification | ||
| is_in: [71120,71397,71621,71727,71816] | ||
| size where true: 5 | ||
| obs post filters: | ||
| - filter: Background Check # gross error check | ||
| filter variables: | ||
| - name: totalSnowDepth | ||
| threshold: 6.25 | ||
| action: | ||
| name: reject | ||
| - filter: Temporal Thinning | ||
| min_spacing: '{{ SNOW_WINDOW_LENGTH }}' | ||
| seed_time: '{{ current_cycle | to_isotime }}' | ||
| category_variable: | ||
| name: MetaData/stationIdentification | ||
| - filter: Met Office Buddy Check | ||
| filter variables: | ||
| - name: totalSnowDepth | ||
| rejection_threshold: 0.5 | ||
| traced_boxes: # trace all observations | ||
| min_latitude: -90 | ||
| max_latitude: 90 | ||
| min_longitude: -180 | ||
| max_longitude: 180 | ||
| search_radius: 150 # km | ||
| station_id_variable: | ||
| name: MetaData/stationIdentification | ||
| num_zonal_bands: 24 | ||
| sort_by_pressure: false | ||
| max_total_num_buddies: 15 | ||
| max_num_buddies_from_single_band: 10 | ||
| max_num_buddies_with_same_station_id: 5 | ||
| use_legacy_buddy_collector: false | ||
| horizontal_correlation_scale: { "-90": 150, "90": 150 } | ||
| temporal_correlation_scale: PT6H | ||
| damping_factor_1: 1.0 | ||
| damping_factor_2: 1.0 | ||
| background_error_group: BkgError |
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