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* removing .ecf from ex-script filename extensions * removing .ecf from ex-script filename extensions Co-authored-by: wx20hw <Helin.Wei@m71a1.ncep.noaa.gov>
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,317 @@ | ||
| #!/bin/ksh | ||
| ################################################################################ | ||
| #### UNIX Script Documentation Block | ||
| # . . | ||
| # Script name: exgdas_gldas.sh.ecf | ||
| # Script description: Runs the global land analysis | ||
| # | ||
| # History: | ||
| # 20191015 Jesse Meng and Youlong Xia, first version | ||
| # 20191123 Fanglin Yang, restructure for global workflow | ||
| ################################################################################ | ||
|
|
||
| # Set environment | ||
| export VERBOSE=${VERBOSE:-"YES"} | ||
| if [ $VERBOSE = "YES" ]; then | ||
| echo $(date) EXECUTING $0 $* >&2 | ||
| set -x | ||
| fi | ||
|
|
||
| ################################# | ||
| # Set up UTILITIES | ||
| ################################# | ||
| export FINDDATE=${FINDDATE:-$HOMEgldas/util/ush/finddate.sh} | ||
| export utilexec=${utilexec:-/gpfs/dell1/nco/ops/nwprod/grib_util.v1.1.0/exec} | ||
| export CNVGRIB=${CNVGRIB:-$utilexec/cnvgrib} | ||
| export WGRIB=${WGRIB:-$utilexec/wgrib} | ||
| export WGRIB2=${WGRIB2:-$utilexec/wgrib2} | ||
| export COPYGB=${COPYGB:-$utilexec/copygb} | ||
| export NDATE=${NDATE:-/gpfs/dell1/nco/ops/nwprod/prod_util.v1.1.0/exec/ips/ndate} | ||
| export DCOMIN=${DCOMIN:-${DCOMROOT:-"/gpfs/dell1/nco/ops/dcom"}} | ||
| export CPCGAUGE=${CPCGAUGE:-/gpfs/dell3/emc/global/dump} | ||
| export COMINgdas=${COMINgdas:-$ROTDIR} | ||
| export OFFLINE_GLDAS=${OFFLINE_GLDAS:-"NO"} | ||
| export ERRSCRIPT=${ERRSCRIPT:-'eval [[ $err = 0 ]]'} | ||
|
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||
|
|
||
| ################################# | ||
| # Set up the running environment | ||
| ################################# | ||
| export COMPONENT=${COMPONENT:-atmos} | ||
| export assim_freq=${assim_freq:-6} | ||
| export gldas_spinup_hours=${gldas_spinup_hours:-72} | ||
| export gldas_cdate=$CDATE | ||
| export gldas_eymd=`echo $gldas_cdate |cut -c 1-8` | ||
| export gldas_ecyc=`echo $gldas_cdate |cut -c 9-10` | ||
| export gldas_sdate=`$NDATE -$gldas_spinup_hours $CDATE` | ||
| export gldas_symd=`echo $gldas_sdate |cut -c 1-8` | ||
| export gldas_scyc=`echo $gldas_sdate |cut -c 9-10` | ||
|
|
||
| export iau_cdate=$CDATE | ||
| if [ "$DOIAU" = "YES" ]; then | ||
| IAU_OFFSET=${IAU_OFFSET:-0} | ||
| IAUHALH=$((IAU_OFFSET/2)) | ||
| export iau_cdate=`$NDATE -$IAUHALH $CDATE` | ||
| fi | ||
| export iau_eymd=`echo $iau_cdate |cut -c 1-8` | ||
| export iau_ecyc=`echo $iau_cdate |cut -c 9-10` | ||
| echo "GLDAS runs from $gldas_sdate to $iau_cdate" | ||
|
|
||
| export CASE=${CASE:-C768} | ||
| export res=$(echo $CASE |cut -c2-5) | ||
| export JCAP=$((2*res-2)) | ||
| export nlat=$((2*res)) | ||
| export nlon=$((4*res)) | ||
|
|
||
| export FIXgldas=${FIXgldas:-$HOMEgfs/fix} | ||
| export topodir=${topodir:-$HOMEgfs/fix/fix_fv3_gmted2010/$CASE/} | ||
|
|
||
| DATA=${DATA:-$pwd/gldastmp$$} | ||
| mkdata=NO | ||
| if [ ! -d $DATA ]; then | ||
| mkdata=YES | ||
| mkdir -p $DATA | ||
| fi | ||
| cd $DATA || exit 1 | ||
| export RUNDIR=$DATA | ||
|
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||
|
|
||
| ################################# | ||
| GDAS=${RUNDIR}/force | ||
| mkdir -p $GDAS | ||
|
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||
| input1=$COMINgdas/gdas.$gldas_symd/$gldas_scyc/$COMPONENT/RESTART | ||
| input2=$COMINgdas/gdas.$gldas_eymd/$gldas_ecyc/$COMPONENT/RESTART | ||
| [[ -d $RUNDIR ]] && rm -fr $RUNDIR/FIX | ||
| [[ -f $RUNDIR/LIS ]] && rm -fr $RUNDIR/LIS | ||
| [[ -d $RUNDIR/input ]] && rm -fr $RUNDIR/input | ||
| mkdir -p $RUNDIR/input | ||
| ln -fs $GDAS $RUNDIR/input/GDAS | ||
| ln -fs $FIXgldas/FIX_T${JCAP} $RUNDIR/FIX | ||
| ln -fs $EXECgldas/gldas_${model} $RUNDIR/LIS | ||
|
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||
|
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||
| #--------------------------------------------------------------- | ||
| ### 1) Get gdas 6-tile netcdf restart file and gdas forcing data | ||
| #--------------------------------------------------------------- | ||
|
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||
| ${USHgldas}/gldas_get_data.sh $gldas_sdate $gldas_cdate | ||
| export err=$? | ||
| $ERRSCRIPT || exit 2 | ||
|
|
||
| #--------------------------------------------------------------- | ||
| ### 2) Get CPC daily precip and temporally disaggreated | ||
| #--------------------------------------------------------------- | ||
|
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||
| ${USHgldas}/gldas_forcing.sh $gldas_symd $gldas_eymd | ||
| export err=$? | ||
| $ERRSCRIPT || exit 3 | ||
|
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||
| # spatially disaggregated | ||
|
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||
| if [ $JCAP -eq 1534 ]; then | ||
| gds='255 4 3072 1536 89909 0 128 -89909 -117 117 768 0 0 0 0 0 0 0 0 0 255 0 0 0 0 0' | ||
| elif [ $JCAP -eq 766 ]; then | ||
| gds='255 4 1536 768 89821 0 128 -89821 -234 234 384 0 0 0 0 0 0 0 0 0 255 0 0 0 0 0' | ||
| elif [ $JCAP -eq 382 ]; then | ||
| gds='255 4 768 384 89641 0 128 -89641 -469 469 192 0 0 0 0 0 0 0 0 0 255 0 0 0 0 0' | ||
| elif [ $JCAP -eq 190 ]; then | ||
| gds='255 4 384 192 89284 0 128 -89284 -938 938 96 0 0 0 0 0 0 0 0 0 255 0 0 0 0 0' | ||
| else | ||
| echo "JCAP=$JCAP no supportted, exit" | ||
| export err=4 | ||
| $ERRSCRIPT || exit 4 | ||
| fi | ||
|
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||
| echo $JCAP | ||
| echo $gds | ||
| ymdpre=`sh $FINDDATE $gldas_symd d-1` | ||
| ymdend=`sh $FINDDATE $gldas_eymd d-2` | ||
| ymd=$ymdpre | ||
|
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||
| if [ $machine = "WCOSS_DELL_P3" ] ; then | ||
| rm -f ./cfile | ||
| touch ./cfile | ||
| fi | ||
|
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||
| while [ $ymd -le $ymdend ]; do | ||
| if [ $ymd -ne $ymdpre ]; then | ||
| if [ $machine = "WCOSS_DELL_P3" ] ; then | ||
| echo "$COPYGB -i3 '-g"$gds"' -x $GDAS/cpc.$ymd/precip.gldas.${ymd}00 $RUNDIR/cmap.gdas.${ymd}00" >> ./cfile | ||
| echo "$COPYGB -i3 '-g"$gds"' -x $GDAS/cpc.$ymd/precip.gldas.${ymd}06 $RUNDIR/cmap.gdas.${ymd}06" >> ./cfile | ||
| else | ||
| $COPYGB -i3 -g"$gds" -x $GDAS/cpc.$ymd/precip.gldas.${ymd}00 $RUNDIR/cmap.gdas.${ymd}00 | ||
| $COPYGB -i3 -g"$gds" -x $GDAS/cpc.$ymd/precip.gldas.${ymd}06 $RUNDIR/cmap.gdas.${ymd}06 | ||
| fi | ||
| fi | ||
| if [ $ymd -ne $ymdend ]; then | ||
| if [ $machine = "WCOSS_DELL_P3" ] ; then | ||
| echo "$COPYGB -i3 '-g"$gds"' -x $GDAS/cpc.$ymd/precip.gldas.${ymd}12 $RUNDIR/cmap.gdas.${ymd}12" >> ./cfile | ||
| echo "$COPYGB -i3 '-g"$gds"' -x $GDAS/cpc.$ymd/precip.gldas.${ymd}18 $RUNDIR/cmap.gdas.${ymd}18" >> ./cfile | ||
| else | ||
| $COPYGB -i3 -g"$gds" -x $GDAS/cpc.$ymd/precip.gldas.${ymd}12 $RUNDIR/cmap.gdas.${ymd}12 | ||
| $COPYGB -i3 -g"$gds" -x $GDAS/cpc.$ymd/precip.gldas.${ymd}18 $RUNDIR/cmap.gdas.${ymd}18 | ||
| fi | ||
| fi | ||
| ymd=`sh $FINDDATE $ymd d+1` | ||
| done | ||
|
|
||
| if [ $machine = "WCOSS_DELL_P3" ] ; then | ||
| $APRUN_GLDAS_DATA_PROC ./cfile | ||
| fi | ||
|
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||
| # create configure file | ||
| ${USHgldas}/gldas_liscrd.sh $gldas_sdate $iau_cdate ${JCAP} | ||
| export err=$? | ||
| $ERRSCRIPT || exit 4 | ||
|
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||
|
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||
| #--------------------------------------------------------------- | ||
| ### 3) Produce initials noah.rst from 6-tile gdas restart files | ||
| #--------------------------------------------------------------- | ||
| rm -f fort.41 fort.141 fort.11 fort.12 | ||
|
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||
| # 3a) create gdas2gldas input file | ||
|
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||
| cat >> fort.141 << EOF | ||
| &config | ||
| data_dir_input_grid="$input1" | ||
| sfc_files_input_grid="${gldas_symd}.${gldas_scyc}0000.sfcanl_data.tile1.nc","${gldas_symd}.${gldas_scyc}0000.sfcanl_data.tile2.nc","${gldas_symd}.${gldas_scyc}0000.sfcanl_data.tile3.nc","${gldas_symd}.${gldas_scyc}0000.sfcanl_data.tile4.nc","${gldas_symd}.${gldas_scyc}0000.sfcanl_data.tile5.nc","${gldas_symd}.${gldas_scyc}0000.sfcanl_data.tile6.nc" | ||
| mosaic_file_input_grid="${CASE}_mosaic.nc" | ||
| orog_dir_input_grid="$topodir" | ||
| orog_files_input_grid="${CASE}_oro_data.tile1.nc","${CASE}_oro_data.tile2.nc","${CASE}_oro_data.tile3.nc","${CASE}_oro_data.tile4.nc","${CASE}_oro_data.tile5.nc","${CASE}_oro_data.tile6.nc" | ||
| i_target=$nlon | ||
| j_target=$nlat | ||
| model="$model" | ||
| / | ||
| EOF | ||
| cp fort.141 fort.41 | ||
|
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||
|
|
||
| # 3b) Use gdas2gldas to generate nemsio file | ||
|
|
||
| export OMP_NUM_THREADS=1 | ||
| $APRUN_GAUSSIAN ${EXECgldas}/gdas2gldas 1>&1 2>&2 | ||
| export err=$? | ||
| $ERRSCRIPT || exit 5 | ||
|
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||
|
|
||
| # 3c)gldas_noah_rst/gldas_noahmp_rst to generate noah.rst | ||
|
|
||
| sfcanl=sfc.gaussian.nemsio | ||
| ln -fs FIX/lmask_gfs_T${JCAP}.bfsa fort.11 | ||
| ln -fs $sfcanl fort.12 | ||
|
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||
| ${EXECgldas}/gldas_${model}_rst 1>&1 2>&2 | ||
| export err=$? | ||
| $ERRSCRIPT || exit 6 | ||
|
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||
| mv $sfcanl ${sfcanl}.$gldas_symd | ||
|
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||
|
|
||
| #--------------------------------------------------------------- | ||
| ### 4) run noah/noahmp model | ||
| #--------------------------------------------------------------- | ||
|
|
||
| $APRUN_GLDAS ./LIS 1>&1 2>&2 | ||
| export err=$? | ||
| $ERRSCRIPT || exit 7 | ||
|
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||
|
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||
| #--------------------------------------------------------------- | ||
| ### 5) using gdas2gldas to generate nemsio file for gldas_eymd | ||
| ### use gldas_post to replace soil moisture and temperature | ||
| ### use gldas2gdas to produce 6-tile restart file | ||
| #--------------------------------------------------------------- | ||
| rm -f fort.41 fort.241 fort.42 | ||
|
|
||
| # 5a) create input file for gdas2gldas | ||
|
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||
| cat >> fort.241 << EOF | ||
| &config | ||
| data_dir_input_grid="$input2" | ||
| sfc_files_input_grid="${iau_eymd}.${iau_ecyc}0000.sfcanl_data.tile1.nc","${iau_eymd}.${iau_ecyc}0000.sfcanl_data.tile2.nc","${iau_eymd}.${iau_ecyc}0000.sfcanl_data.tile3.nc","${iau_eymd}.${iau_ecyc}0000.sfcanl_data.tile4.nc","${iau_eymd}.${iau_ecyc}0000.sfcanl_data.tile5.nc","${iau_eymd}.${iau_ecyc}0000.sfcanl_data.tile6.nc" | ||
| mosaic_file_input_grid="${CASE}_mosaic.nc" | ||
| orog_dir_input_grid="$topodir" | ||
| orog_files_input_grid="${CASE}_oro_data.tile1.nc","${CASE}_oro_data.tile2.nc","${CASE}_oro_data.tile3.nc","${CASE}_oro_data.tile4.nc","${CASE}_oro_data.tile5.nc","${CASE}_oro_data.tile6.nc" | ||
| i_target=$nlon | ||
| j_target=$nlat | ||
| model="$model" | ||
| / | ||
| EOF | ||
| cp fort.241 fort.41 | ||
|
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| # 5b) use gdas2gldas to produce nemsio file | ||
|
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| export OMP_NUM_THREADS=1 | ||
| $APRUN_GAUSSIAN ${EXECgldas}/gdas2gldas 1>&1 2>&2 | ||
| export err=$? | ||
| $ERRSCRIPT || exit 8 | ||
|
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|
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| # 5c) use gldas_post to replace soil moisture and temperature | ||
|
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| yyyy=`echo $iau_eymd | cut -c1-4` | ||
| gbin=$RUNDIR/EXP901/NOAH/$yyyy/$iau_eymd/LIS.E901.${iau_eymd}${iau_ecyc}.NOAHgbin | ||
| sfcanl=sfc.gaussian.nemsio | ||
| rm -rf fort.11 fort.12 | ||
| ln -fs $gbin fort.11 | ||
| ln -fs $sfcanl fort.12 | ||
|
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| ${EXECgldas}/gldas_post 1>&1 2>&2 | ||
| export err=$? | ||
| $ERRSCRIPT || exit 9 | ||
|
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| cp fort.22 ./gldas.nemsio | ||
| mv fort.22 ${sfcanl}.gldas | ||
|
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| # 5d) use gldas2gdas to create 6-tile restart tiles | ||
|
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| cat >> fort.42 << EOF | ||
| &config | ||
| orog_dir_gdas_grid="$topodir" | ||
| mosaic_file_gdas_grid="${CASE}_mosaic.nc" | ||
| / | ||
| EOF | ||
|
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||
| # copy/link gdas netcdf tiles | ||
| k=1; while [ $k -le 6 ]; do | ||
| cp $input2/${iau_eymd}.${iau_ecyc}0000.sfcanl_data.tile${k}.nc ./sfc_data.tile${k}.nc | ||
| k=$((k+1)) | ||
| done | ||
|
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||
| # copy soil type | ||
| ln -fs FIX/stype_gfs_T${JCAP}.bfsa stype_gfs_T${JCAP}.bfsa | ||
|
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||
| export OMP_NUM_THREADS=1 | ||
| $APRUN_GAUSSIAN $EXECgldas/gldas2gdas 1>&1 2>&2 | ||
| export err=$? | ||
| $ERRSCRIPT || exit 10 | ||
|
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||
|
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| # 5e) archive gldas results | ||
|
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| if [ $OFFLINE_GLDAS = "YES" ]; then | ||
| ${USHgldas}/gldas_archive.sh $gldas_symd $gldas_eymd | ||
| export err=$? | ||
| $ERRSCRIPT || exit 11 | ||
| else | ||
| k=1; while [ $k -le 6 ]; do | ||
| mv $input2/${iau_eymd}.${iau_ecyc}0000.sfcanl_data.tile${k}.nc $input2/${iau_eymd}.${iau_ecyc}0000.sfcanl_data.tile${k}.nc_bfgldas | ||
| cp sfc_data.tile${k}.nc $input2/${iau_eymd}.${iau_ecyc}0000.sfcanl_data.tile${k}.nc | ||
| k=$((k+1)) | ||
| done | ||
| fi | ||
|
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|
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| #------------------------------------------------------------------ | ||
| # Clean up before leaving | ||
| if [ $mkdata = "YES" ]; then rm -rf $DATA; fi | ||
|
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||
| set +x | ||
| if [ $VERBOSE = "YES" ] ; then | ||
| echo $(date) EXITING $0 with return code $err >&2 | ||
| fi | ||
| exit $err | ||
|
|