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Fixes on initializing snow depth over ice and changes z0ice #461

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merged 7 commits into from
Jan 10, 2022
Merged

Fixes on initializing snow depth over ice and changes z0ice #461

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9a5e4aa
updating .gitmodules
SMoorthi-emc Jan 4, 2022
7faffc0
creating a new branch for PR
SMoorthi-emc Jan 4, 2022
a8b3501
adding threading to module_block_data.F90 which improves performance
SMoorthi-emc Jan 5, 2022
01ae48c
after merge with fv3atm/develop
SMoorthi-emc Jan 5, 2022
f292206
after submodule sync
SMoorthi-emc Jan 6, 2022
5fd3e1c
after merge with fv3atm/develop
SMoorthi-emc Jan 7, 2022
5d5e441
changing .gitmodules
SMoorthi-emc Jan 10, 2022
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2 changes: 1 addition & 1 deletion atmos_model.F90
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -1572,7 +1572,7 @@ subroutine assign_importdata(jdat, rc)
type(ESMF_Grid) :: grid
type(ESMF_Field) :: dbgField
character(19) :: currtimestring
real (kind=GFS_kind_phys), parameter :: z0ice=1.1 ! (in cm)
real (kind=GFS_kind_phys), parameter :: z0ice=1.0 ! (in cm)

!
! real(kind=GFS_kind_phys), parameter :: himax = 8.0 !< maximum ice thickness allowed
Expand Down
2 changes: 1 addition & 1 deletion ccpp/physics
Open in desktop
Submodule physics updated 6 files
+17 −17 physics/GFS_rrtmgp_lw_post.F90
+30 −28 physics/GFS_rrtmgp_sw_post.F90
+18 −17 physics/GFS_surface_composites.F90
+56 −55 physics/cires_ugwp.F90
+111 −111 physics/micro_mg3_0.F90
+4 −4 physics/sfc_sice.f
13 changes: 13 additions & 0 deletions cpl/module_block_data.F90
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Original file line number Diff line number Diff line change
Expand Up @@ -71,6 +71,7 @@ subroutine block_copy_1d_i4_to_2d_r8(destin_ptr, source_ptr, block, block_index,
if (associated(destin_ptr) .and. associated(source_ptr)) then
factor = 1._kind_phys
if (present(scale_factor)) factor = scale_factor
!$omp parallel do private(ix,ib,jb,i,j)
do ix = 1, block%blksz(block_index)
ib = block%index(block_index)%ii(ix)
jb = block%index(block_index)%jj(ix)
Expand Down Expand Up @@ -105,6 +106,7 @@ subroutine block_copy_1d_to_2d_r8(destin_ptr, source_ptr, block, block_index, sc
if (associated(destin_ptr) .and. associated(source_ptr)) then
factor = 1._kind_phys
if (present(scale_factor)) factor = scale_factor
!$omp parallel do private(ix,ib,jb,i,j)
do ix = 1, block%blksz(block_index)
ib = block%index(block_index)%ii(ix)
jb = block%index(block_index)%jj(ix)
Expand Down Expand Up @@ -144,6 +146,7 @@ subroutine block_copy_1dslice_to_2d_r8(destin_ptr, source_ptr, slice, block, blo
if (slice > 0 .and. slice <= size(source_ptr, dim=2)) then
factor = 1._kind_phys
if (present(scale_factor)) factor = scale_factor
!$omp parallel do private(ix,ib,jb,i,j)
do ix = 1, block%blksz(block_index)
ib = block%index(block_index)%ii(ix)
jb = block%index(block_index)%jj(ix)
Expand Down Expand Up @@ -182,6 +185,7 @@ subroutine block_copy_2d_to_3d_r8(destin_ptr, source_ptr, block, block_index, sc
factor = 1._kind_phys
if (present(scale_factor)) factor = scale_factor
do k = 1, size(source_ptr, dim=2)
!$omp parallel do private(ix,ib,jb,i,j)
do ix = 1, block%blksz(block_index)
ib = block%index(block_index)%ii(ix)
jb = block%index(block_index)%jj(ix)
Expand Down Expand Up @@ -219,6 +223,7 @@ subroutine block_copy_2d_to_2d_r8(destin_ptr, source_ptr, block, block_index, sc
if (associated(destin_ptr) .and. associated(source_ptr)) then
factor = 1._kind_phys
if (present(scale_factor)) factor = scale_factor
!$omp parallel do private(ix,ib,jb,i,j)
do ix = 1, block%blksz(block_index)
ib = block%index(block_index)%ii(ix)
jb = block%index(block_index)%jj(ix)
Expand Down Expand Up @@ -253,6 +258,7 @@ subroutine block_array_copy_2d_to_2d_r8(destin_ptr, source_arr, block, block_ind
if (associated(destin_ptr)) then
factor = 1._kind_phys
if (present(scale_factor)) factor = scale_factor
!$omp parallel do private(ix,ib,jb,i,j)
do ix = 1, block%blksz(block_index)
ib = block%index(block_index)%ii(ix)
jb = block%index(block_index)%jj(ix)
Expand Down Expand Up @@ -290,6 +296,7 @@ subroutine block_copy_3d_to_3d_r8(destin_ptr, source_ptr, block, block_index, sc
factor = 1._kind_phys
if (present(scale_factor)) factor = scale_factor
do k = 1, size(source_ptr, dim=3)
!$omp parallel do private(ix,ib,jb,i,j)
do ix = 1, block%blksz(block_index)
ib = block%index(block_index)%ii(ix)
jb = block%index(block_index)%jj(ix)
Expand Down Expand Up @@ -326,6 +333,7 @@ subroutine block_array_copy_3d_to_3d_r8(destin_ptr, source_arr, block, block_ind
factor = 1._kind_phys
if (present(scale_factor)) factor = scale_factor
do k = 1, size(source_arr, dim=3)
!$omp parallel do private(ix,ib,jb,i,j)
do ix = 1, block%blksz(block_index)
ib = block%index(block_index)%ii(ix)
jb = block%index(block_index)%jj(ix)
Expand Down Expand Up @@ -367,6 +375,7 @@ subroutine block_copy_3dslice_to_3d_r8(destin_ptr, source_ptr, slice, block, blo
factor = 1._kind_phys
if (present(scale_factor)) factor = scale_factor
do k = 1, size(source_ptr, dim=3)
!$omp parallel do private(ix,ib,jb,i,j)
do ix = 1, block%blksz(block_index)
ib = block%index(block_index)%ii(ix)
jb = block%index(block_index)%jj(ix)
Expand Down Expand Up @@ -407,6 +416,7 @@ subroutine block_array_copy_3dslice_to_3d_r8(destin_ptr, source_arr, slice, bloc
factor = 1._kind_phys
if (present(scale_factor)) factor = scale_factor
do k = 1, size(source_arr, dim=3)
!$omp parallel do private(ix,ib,jb,i,j)
do ix = 1, block%blksz(block_index)
ib = block%index(block_index)%ii(ix)
jb = block%index(block_index)%jj(ix)
Expand Down Expand Up @@ -441,6 +451,7 @@ subroutine block_fill_2d_r8(destin_ptr, fill_value, block, block_index, rc)
! -- begin
localrc = ESMF_RC_PTR_NOTALLOC
if (associated(destin_ptr)) then
!$omp parallel do private(ix,ib,jb,i,j)
do ix = 1, block%blksz(block_index)
ib = block%index(block_index)%ii(ix)
jb = block%index(block_index)%jj(ix)
Expand Down Expand Up @@ -474,6 +485,7 @@ subroutine block_fill_3d_r8(destin_ptr, fill_value, block, block_index, rc)
localrc = ESMF_RC_PTR_NOTALLOC
if (associated(destin_ptr)) then
do k = 1, size(destin_ptr, dim=3)
!$omp parallel do private(ix,ib,jb,i,j)
do ix = 1, block%blksz(block_index)
ib = block%index(block_index)%ii(ix)
jb = block%index(block_index)%jj(ix)
Expand Down Expand Up @@ -586,6 +598,7 @@ subroutine block_combine_frac_1d_to_2d_r8(destin_ptr, fract1_ptr, fract2_ptr, bl
localrc = ESMF_RC_PTR_NOTALLOC
if (associated(destin_ptr) .and. &
associated(fract1_ptr) .and. associated(fract2_ptr)) then
!$omp parallel do private(ix,ib,jb,i,j)
do ix = 1, block%blksz(block_index)
ib = block%index(block_index)%ii(ix)
jb = block%index(block_index)%jj(ix)
Expand Down
78 changes: 56 additions & 22 deletions io/FV3GFS_io.F90
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Original file line number Diff line number Diff line change
Expand Up @@ -1462,7 +1462,7 @@ subroutine sfc_prop_restart_read (Sfcprop, Atm_block, Model, fv_domain, warm_sta
do nb = 1, Atm_block%nblks
do ix = 1, Atm_block%blksz(nb)
if (Sfcprop(nb)%landfrac(ix) > zero) then
tem = one / Sfcprop(nb)%landfrac(ix)
tem = one / (Sfcprop(nb)%fice(ix)*(one-Sfcprop(nb)%landfrac(ix))+Sfcprop(nb)%landfrac(ix))
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Moorthi, why do we include the ice section when computing the snod on land?

Sfcprop(nb)%snodl(ix) = Sfcprop(nb)%snowd(ix) * tem
else
Sfcprop(nb)%snodl(ix) = zero
Expand All @@ -1477,7 +1477,7 @@ subroutine sfc_prop_restart_read (Sfcprop, Atm_block, Model, fv_domain, warm_sta
do nb = 1, Atm_block%nblks
do ix = 1, Atm_block%blksz(nb)
if (Sfcprop(nb)%landfrac(ix) > zero) then
tem = one / Sfcprop(nb)%landfrac(ix)
tem = one / (Sfcprop(nb)%fice(ix)*(one-Sfcprop(nb)%landfrac(ix))+Sfcprop(nb)%landfrac(ix))
Sfcprop(nb)%weasdl(ix) = Sfcprop(nb)%weasd(ix) * tem
else
Sfcprop(nb)%weasdl(ix) = zero
Expand All @@ -1501,7 +1501,9 @@ subroutine sfc_prop_restart_read (Sfcprop, Atm_block, Model, fv_domain, warm_sta
!$omp parallel do default(shared) private(nb, ix)
do nb = 1, Atm_block%nblks
do ix = 1, Atm_block%blksz(nb)
Sfcprop(nb)%zorlw(ix) = Sfcprop(nb)%zorl(ix) !--- compute zorlw from existing variables
if (Sfcprop(nb)%landfrac(ix) < one .and. Sfcprop(nb)%fice(ix) < one) then
Sfcprop(nb)%zorlw(ix) = min(Sfcprop(nb)%zorl(ix), 0.317)
endif
enddo
enddo
endif
Expand All @@ -1521,7 +1523,9 @@ subroutine sfc_prop_restart_read (Sfcprop, Atm_block, Model, fv_domain, warm_sta
!$omp parallel do default(shared) private(nb, ix)
do nb = 1, Atm_block%nblks
do ix = 1, Atm_block%blksz(nb)
Sfcprop(nb)%zorli(ix) = Sfcprop(nb)%zorl(ix) !--- compute zorli from existing variables
if (Sfcprop(nb)%fice(ix)*(one-Sfcprop(nb)%landfrac(ix)) > zero) then
Sfcprop(nb)%zorli(ix) = one
endif
enddo
enddo
endif
Expand All @@ -1547,6 +1551,36 @@ subroutine sfc_prop_restart_read (Sfcprop, Atm_block, Model, fv_domain, warm_sta
enddo
endif

if (sfc_var2(i,j,47) < -9990.0_r8) then
if (Model%me == Model%master ) call mpp_error(NOTE, 'gfs_driver::surface_props_input - computing snodi')
!$omp parallel do default(shared) private(nb, ix, tem)
do nb = 1, Atm_block%nblks
do ix = 1, Atm_block%blksz(nb)
if (Sfcprop(nb)%fice(ix) > zero) then
tem = one / (Sfcprop(nb)%fice(ix)*(one-Sfcprop(nb)%landfrac(ix))+Sfcprop(nb)%landfrac(ix))
Sfcprop(nb)%snodi(ix) = min(Sfcprop(nb)%snowd(ix) * tem, 3.0)
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Also here, why is landfrac included when computing snod on ice?

else
Sfcprop(nb)%snodi(ix) = zero
endif
enddo
enddo
endif

if (sfc_var2(i,j,48) < -9990.0_r8) then
if (Model%me == Model%master ) call mpp_error(NOTE, 'gfs_driver::surface_props_input - computing weasdi')
!$omp parallel do default(shared) private(nb, ix, tem)
do nb = 1, Atm_block%nblks
do ix = 1, Atm_block%blksz(nb)
if (Sfcprop(nb)%fice(ix) > zero) then
tem = one / (Sfcprop(nb)%fice(ix)*(one-Sfcprop(nb)%landfrac(ix))+Sfcprop(nb)%landfrac(ix))
Sfcprop(nb)%weasdi(ix) = Sfcprop(nb)%weasd(ix)*tem
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@junwang-noaa junwang-noaa Jan 10, 2022 •
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I saw in GFS_typedefs.meta, the weasd is already defined as: "water equiv of acc snow depth over land and sea ice", why do we need to multiply "tem" and not directly set weasdi=weasd?

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Jun,
In "GFS_surface_composites.F90" weasd is computed in the loop
" if (frac_grid) then

    do i=1, im

      ! Three-way composites (fields from sfc_diff)
      txl   = landfrac(i)            ! land fraction
      wfrac = one - txl              ! ocean fraction
      txi   = cice(i) * wfrac        ! txi = ice fraction wrt whole cell
      txo   = max(zero, wfrac-txi)   ! txo = open water fraction

     !gflx(i)   = txl*gflx_lnd(i)  + txi*gflx_ice(i)  + txo*gflx_wat(i)
      ep1d(i)   = txl*ep1d_lnd(i)  + txi*ep1d_ice(i)  + txo*ep1d_wat(i)
      weasd(i)  = txl*weasd_lnd(i) + txi*weasd_ice(i)
      snowd(i)  = txl*snowd_lnd(i) + txi*snowd_ice(i)
     !tprcp(i)  = txl*tprcp_lnd(i) + txi*tprcp_ice(i) + txo*tprcp_wat(i)"

So, if you set weasd_lnd=weasd/(txi+txl) and wead_ice=weasd/(txi+txl) and then use the formula above you get the right answer. i.el.
txlweasd_lnd(i) + txiweasd_ice(i) = weasd(i) * (txl+txi) / (txl+txi) = weasd(i)

Please note that this has any impact when "txl+txi) is < 1. If txl+txi=1, then there is no impact - so this affects only the fractional grid.

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Moorthi, I see the changes only have impact on fraction grid when txl+txi< 1. Just for discussion. I am wondering since in the code weasd/snowd are computed as composite fields GFS_surface_composites.F90 fields over land and ice, could we just use txl/(txl+txi) and txi/(txl+txi) in weasd/snowd computation?

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I am not sure I completely understand this.
For completeness,
weasd = txl * weasd_lnd + txi * weasd_ice + txo * weasd_ocn
and txl+txi+txo=1.0
However, weasd_ocn=0.0; so it is left out from the computation.
What is done in initial condition is going to be changed within one timestep by the snow imported from CICE6 when coupled.
Moorthi

else
Sfcprop(nb)%weasdi(ix) = zero
endif
enddo
enddo
endif

if (Model%use_cice_alb) then
if (sfc_var2(i,j,49) < -9990.0_r8) then
!$omp parallel do default(shared) private(nb, ix)
Expand Down Expand Up @@ -3058,7 +3092,7 @@ subroutine fv_phys_bundle_setup(Diag, axes, phys_bundle, fcst_grid, quilting, nb
!
implicit none
!
type(GFS_externaldiag_type),intent(in) :: Diag(:)
type(GFS_externaldiag_type),intent(in) :: Diag(:)
integer, intent(in) :: axes(:)
type(ESMF_FieldBundle),intent(inout) :: phys_bundle(:)
type(ESMF_Grid),intent(inout) :: fcst_grid
Expand Down Expand Up @@ -3099,7 +3133,7 @@ subroutine fv_phys_bundle_setup(Diag, axes, phys_bundle, fcst_grid, quilting, nb
!------------------------------------------------------------
!
allocate(bdl_intplmethod(nbdlphys), outputfile(nbdlphys))
if(mpp_pe()==mpp_root_pe())print *,'in fv_phys bundle,nbdl=',nbdlphys
if(mpp_pe()==mpp_root_pe()) print *,'in fv_phys bundle,nbdl=',nbdlphys
do ibdl = 1, nbdlphys
loutputfile = .false.
call ESMF_FieldBundleGet(phys_bundle(ibdl), name=physbdl_name,rc=rc)
Expand Down Expand Up @@ -3178,14 +3212,14 @@ subroutine fv_phys_bundle_setup(Diag, axes, phys_bundle, fcst_grid, quilting, nb
allocate(udimList(udimCount))
call ESMF_AttributeGet(fcst_grid, convention="NetCDF", purpose="FV3", &
name="vertical_dim_labels", valueList=udimList, rc=rc)
! if(mpp_pe()==mpp_root_pe())print *,'in fv3gfsio, vertical
! if(mpp_pe()==mpp_root_pe()) print *,'in fv3gfsio, vertical
! list=',udimList(1:udimCount),'rc=',rc

if (ESMF_LogFoundError(rcToCheck=rc, msg=ESMF_LOGERR_PASSTHRU, line=__LINE__, file=__FILE__)) return

else

if(mpp_pe()==mpp_root_pe())print *,'in fv_dyn bundle,axis_name_vert=',axis_name_vert
if(mpp_pe()==mpp_root_pe()) print *,'in fv_dyn bundle,axis_name_vert=',axis_name_vert
call ESMF_AttributeAdd(fcst_grid, convention="NetCDF", purpose="FV3", &
attrList=(/"vertical_dim_labels"/), rc=rc)
if (ESMF_LogFoundError(rcToCheck=rc, msg=ESMF_LOGERR_PASSTHRU, line=__LINE__, file=__FILE__)) return
Expand All @@ -3207,13 +3241,13 @@ subroutine fv_phys_bundle_setup(Diag, axes, phys_bundle, fcst_grid, quilting, nb
direction, edges, Domain, DomainU, axis_data, &
num_attributes=num_attributes, attributes=attributes)
!
edgesS=''
edgesS = ''
do i = 1,num_axes_phys
if(axes(i) == edges) edgesS=axis_name(i)
enddo
! Add vertical dimension Attributes to Grid
if( id>2 ) then
! if(mpp_pe()==mpp_root_pe())print *,' in dyn add grid, axis_name=', &
! if(mpp_pe()==mpp_root_pe()) print *,' in dyn add grid, axis_name=', &
! trim(axis_name(id)),'axis_data=',axis_data
if(trim(edgesS)/='') then
call ESMF_AttributeAdd(fcst_grid, convention="NetCDF", purpose="FV3", &
Expand Down Expand Up @@ -3415,62 +3449,62 @@ subroutine add_field_to_phybundle(var_name,long_name,units,cell_methods, axes,ph
!
!*** add field attributes
call ESMF_AttributeAdd(field, convention="NetCDF", purpose="FV3", &
attrList=(/"long_name"/), rc=rc)
attrList=(/"long_name"/), rc=rc)
if (ESMF_LogFoundError(rcToCheck=rc, msg=ESMF_LOGERR_PASSTHRU, &
line=__LINE__, file=__FILE__)) call ESMF_Finalize(endflag=ESMF_END_ABORT)

call ESMF_AttributeSet(field, convention="NetCDF", purpose="FV3", &
name='long_name',value=trim(long_name),rc=rc)
name='long_name',value=trim(long_name),rc=rc)
if (ESMF_LogFoundError(rcToCheck=rc, msg=ESMF_LOGERR_PASSTHRU, &
line=__LINE__, file=__FILE__)) call ESMF_Finalize(endflag=ESMF_END_ABORT)

call ESMF_AttributeAdd(field, convention="NetCDF", purpose="FV3", &
attrList=(/"units"/), rc=rc)
attrList=(/"units"/), rc=rc)
if (ESMF_LogFoundError(rcToCheck=rc, msg=ESMF_LOGERR_PASSTHRU, &
line=__LINE__, file=__FILE__)) call ESMF_Finalize(endflag=ESMF_END_ABORT)

call ESMF_AttributeSet(field, convention="NetCDF", purpose="FV3", &
name='units',value=trim(units),rc=rc)
name='units',value=trim(units),rc=rc)
if (ESMF_LogFoundError(rcToCheck=rc, msg=ESMF_LOGERR_PASSTHRU, &
line=__LINE__, file=__FILE__)) call ESMF_Finalize(endflag=ESMF_END_ABORT)

call ESMF_AttributeAdd(field, convention="NetCDF", purpose="FV3", &
attrList=(/"missing_value"/), rc=rc)
attrList=(/"missing_value"/), rc=rc)
if (ESMF_LogFoundError(rcToCheck=rc, msg=ESMF_LOGERR_PASSTHRU, &
line=__LINE__, file=__FILE__)) call ESMF_Finalize(endflag=ESMF_END_ABORT)

call ESMF_AttributeSet(field, convention="NetCDF", purpose="FV3", &
name='missing_value',value=missing_value,rc=rc)
name='missing_value',value=missing_value,rc=rc)
if (ESMF_LogFoundError(rcToCheck=rc, msg=ESMF_LOGERR_PASSTHRU, &
line=__LINE__, file=__FILE__)) call ESMF_Finalize(endflag=ESMF_END_ABORT)

call ESMF_AttributeAdd(field, convention="NetCDF", purpose="FV3", &
attrList=(/"_FillValue"/), rc=rc)
attrList=(/"_FillValue"/), rc=rc)
if (ESMF_LogFoundError(rcToCheck=rc, msg=ESMF_LOGERR_PASSTHRU, &
line=__LINE__, file=__FILE__)) call ESMF_Finalize(endflag=ESMF_END_ABORT)

call ESMF_AttributeSet(field, convention="NetCDF", purpose="FV3", &
name='_FillValue',value=missing_value,rc=rc)
name='_FillValue',value=missing_value,rc=rc)
if (ESMF_LogFoundError(rcToCheck=rc, msg=ESMF_LOGERR_PASSTHRU, &
line=__LINE__, file=__FILE__)) call ESMF_Finalize(endflag=ESMF_END_ABORT)

call ESMF_AttributeAdd(field, convention="NetCDF", purpose="FV3", &
attrList=(/"cell_methods"/), rc=rc)
attrList=(/"cell_methods"/), rc=rc)
if (ESMF_LogFoundError(rcToCheck=rc, msg=ESMF_LOGERR_PASSTHRU, &
line=__LINE__, file=__FILE__)) call ESMF_Finalize(endflag=ESMF_END_ABORT)

call ESMF_AttributeSet(field, convention="NetCDF", purpose="FV3", &
name='cell_methods',value=trim(cell_methods),rc=rc)
name='cell_methods',value=trim(cell_methods),rc=rc)
if (ESMF_LogFoundError(rcToCheck=rc, msg=ESMF_LOGERR_PASSTHRU, &
line=__LINE__, file=__FILE__)) call ESMF_Finalize(endflag=ESMF_END_ABORT)
!
call ESMF_AttributeAdd(field, convention="NetCDF", purpose="FV3", &
attrList=(/"output_file"/), rc=rc)
attrList=(/"output_file"/), rc=rc)
if (ESMF_LogFoundError(rcToCheck=rc, msg=ESMF_LOGERR_PASSTHRU, &
line=__LINE__, file=__FILE__)) call ESMF_Finalize(endflag=ESMF_END_ABORT)

call ESMF_AttributeSet(field, convention="NetCDF", purpose="FV3", &
name='output_file',value=trim(output_file),rc=rc)
name='output_file',value=trim(output_file),rc=rc)
if (ESMF_LogFoundError(rcToCheck=rc, msg=ESMF_LOGERR_PASSTHRU, &
line=__LINE__, file=__FILE__)) call ESMF_Finalize(endflag=ESMF_END_ABORT)

Expand Down