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HAFS related moving-nesting, nest coupling, and movable output grid capabilities #501

Merged
merged 332 commits into from
Apr 11, 2022
Merged

HAFS related moving-nesting, nest coupling, and movable output grid capabilities #501

merged 332 commits into from
Apr 11, 2022
This pull request is big! We’re only showing the most recent 250 commits.

Commits on May 14, 2020

  1. Update .gitmodules and submodule pointer for ccpp-physics for code re… 

    …view and testing
    @climbfuji
    climbfuji committed May 14, 2020
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  2. Merge branch 'support/HAFS' of https://github.com/hafs-community/fv3atm… 

    … into update_dtc_hwrf_physics_from_hafs_community_and_fix_FA_table_initialization
    @climbfuji
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  3. Merge branch 'dtc_hwrf_physics' of https://github.com/mzhangw/fv3atm … 

    …into update_dtc_hwrf_physics_from_hafs_community_and_fix_FA_table_initialization
    @climbfuji
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Commits on May 15, 2020

  1. Update submodule pointer for ccpp/physics

    @climbfuji
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Commits on May 20, 2020

  1. Revert change to .gitmodules and update submodule pointer for ccpp-ph… 

    …ysics
    @climbfuji
    climbfuji committed May 20, 2020
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  2. Merge pull request NOAA-EMC#50 from climbfuji/update_dtc_hwrf_physics… 

    …_from_hafs_community_and_fix_FA_table_initialization

dtc/hwrf-physics: update from HAFS community and SDFs for HWRF physics test
    @climbfuji
    climbfuji authored May 20, 2020
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Commits on May 28, 2020

  1. Merge branch 'dtc/hwrf-physics' into hwrf_sfc_PR

    @grantfirl
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  2. Update .gitmodules and submodule pointer for code review and testing

    @climbfuji
    climbfuji committed May 28, 2020
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  3. Merge pull request #1 from climbfuji/hwrf_sfc_PR_dom_for_grant 

    Update .gitmodules and submodule pointer for code review and testing
    @grantfirl
    grantfirl authored May 28, 2020
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  4. update submodule pointer for ccpp/physics

    @grantfirl
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Commits on May 29, 2020

  1. update submodule pointer for ccpp/physics and revert changes to .gitm… 

    …odules
    @grantfirl
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  2. Merge pull request NOAA-EMC#49 from grantfirl/hwrf_sfc_PR 

    support HWRF Noah LSM and GFDL surface layer
    @grantfirl
    grantfirl authored May 29, 2020
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Commits on May 30, 2020

  1. Add a new ccpp suite of suite_HAFS_v0_gfdlmp_nocpugwd.xml.

    @BinLiu-NOAA
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Commits on Jun 4, 2020

  1. Merge remote-tracking branch 'remotes/origin/support/HAFS' into featu… 

    …re/hafs_couplehycom
    @BinLiu-NOAA
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Commits on Jun 6, 2020

  1. Merge remote-tracking branch 'remotes/upstream/develop' into support/… 

    …HAFS
    @BinLiu-NOAA
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Commits on Jun 11, 2020

  1. Merge NUOPC sst import with internal sfcprop%tsfc if cell contains 

    missing values.
    @danrosen25
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  2. Merge remote-tracking branch 'remotes/origin/support/HAFS' into featu… 

    …re/hafs_couplehycom
    @BinLiu-NOAA
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Commits on Jun 18, 2020

  1. Merge branch 'support/HAFS' of https://github.com/hafs-community/fv3atm… 

    … into HEAD
    @climbfuji
    climbfuji committed Jun 18, 2020
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  2. Update .gitmodules and submodule pointers for GFDL_atmos_cubed_sphere… 

    …, ccpp-framework, ccpp-physics
    @climbfuji
    climbfuji committed Jun 18, 2020
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  3. modify HWRF_nogwdps as HWRF physics test

    @mzhangw
    mzhangw committed Jun 18, 2020
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  4. Merge branch 'nogwdps_sdf' of https://github.com/mzhangw/fv3atm into … 

    …update_dtc-hwrf-physics_from_hafs_support_20200618
    @climbfuji
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  5. Correct CCPP version number in HWRF SDFs

    @climbfuji
    climbfuji committed Jun 18, 2020
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Commits on Jun 19, 2020

  1. Revert change to .gitmodules and update submodule pointer for ccpp-ph… 

    …ysics
    @climbfuji
    climbfuji committed Jun 19, 2020
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  2. Merge pull request NOAA-EMC#54 from climbfuji/update_dtc-hwrf-physics… 

    …_from_hafs_support_20200618

dtc/hwrf-physics: update from support/hafs 2020/06/18

These code changes have been approved previously when merged into the authoritative branches (which were then brought to support/HAFS). Merging without approval.
    @climbfuji
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  3. Update .gitmodules and submodule pointer for ccpp-physics for code re… 

    …view and testing
    @climbfuji
    climbfuji committed Jun 19, 2020
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Commits on Jun 21, 2020

  1. Update the ccpp/physics sumodule to point to the feature/hwrf_physics… 

    … branch in the hafs-community fork.
    @BinLiu-NOAA
    BinLiu-NOAA committed Jun 21, 2020
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Commits on Jun 22, 2020

  1. Add a new SDF suite_HAFS_v0_gfdlmp_nocpnsst.xml by turning off nsst.

    @BinLiu-NOAA
    BinLiu-NOAA committed Jun 22, 2020
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Commits on Jun 23, 2020

  1. Add the sfc_ocean item in suite_HAFS_v0_gfdlmp_nocpnsst.xml.

    @BinLiu-NOAA
    BinLiu-NOAA committed Jun 23, 2020
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Commits on Jun 24, 2020

  1. Rename or clean up some HAFS related ccpp suite definition files.

    @BinLiu-NOAA
    BinLiu-NOAA committed Jun 24, 2020
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Commits on Jun 25, 2020

  1. Merge pull request #3 from hafs-community/feature/merge_hwrf_physics 

    Rename or clean up some HAFS hwrf physics related SDFs
    @climbfuji
    climbfuji authored Jun 25, 2020
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  2. Update .gitmodules and submodule pointer for ccpp-physics for code re… 

    …view and testing
    @climbfuji
    climbfuji committed Jun 25, 2020
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  3. Remove suite_FV3_HAFS_FA_HWRF_RRTMG.xml

    @climbfuji
    climbfuji committed Jun 25, 2020
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Commits on Jun 26, 2020

  1. Revert change to .gitmodules and update submodule pointer for ccpp-ph… 

    …ysics
    @climbfuji
    climbfuji committed Jun 26, 2020
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  2. Merge pull request #5 from climbfuji/update_hafs_from_dtc_hwrf_physic… 

    …s_20200619

Update support/HAFS from NCAR dtc/hwrf-physics 2020/06/19
    @climbfuji
    climbfuji authored Jun 26, 2020
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Commits on Jul 3, 2020

  1. Merge remote-tracking branch 'remotes/upstream/develop' into support/… 

    …HAFS
    @BinLiu-NOAA
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  2. Following the changes in other SDFs, move GFS_DCNV_generic_pre to the… 

    … proper

location for HAFS related SDFs.
    @BinLiu-NOAA
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Commits on Jul 4, 2020

  1. Merge remote-tracking branch 'remotes/origin/support/HAFS' into featu… 

    …re/hafs_couplehycom

And add a new SDF of suite_HAFS_v0_gfdlmp_nocpnsstugwd.xml
    @BinLiu-NOAA
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Commits on Jul 8, 2020

  1. Merge remote-tracking branch 'remotes/upstream/develop' into feature/… 

    …sync_develop_20200703
    @BinLiu-NOAA
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  2. Update submodule ccpp/physics

    @BinLiu-NOAA
    BinLiu-NOAA committed Jul 8, 2020
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Commits on Jul 9, 2020

  1. Update submodule ccpp/physics

    @BinLiu-NOAA
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Commits on Jul 11, 2020

  1. Merge remote-tracking branch 'remotes/origin/feature/sync_develop_202… 

    …00703' into feature/hafs_couplehycom
    @BinLiu-NOAA
    BinLiu-NOAA committed Jul 11, 2020
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  2. Update submodule atmos_cubed_sphere.

    @BinLiu-NOAA
    BinLiu-NOAA committed Jul 11, 2020
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Commits on Jul 12, 2020

  1. Udpate the atmos_cubed_sphere submodule to point to the support/HAFS … 

    …branch in

the hafs-community fork, which has a bug fix to enable running
ufs-weather-model with other vertical level configurations (in addition to
L64), when using the external initial conditions generated by UFS_UTILS from
GFS input files.
    @BinLiu-NOAA
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Commits on Jul 16, 2020

  1. Merge remote-tracking branch 'remotes/upstream/develop' into feature/… 

    …sync_develop_20200703
    @BinLiu-NOAA
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Commits on Jul 17, 2020

  1. Update ccpp/physics.

    @BinLiu-NOAA
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  2. Merge remote-tracking branch 'remotes/origin/feature/sync_develop_202… 

    …00703' into feature/hafs_couplehycom
    @BinLiu-NOAA
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Commits on Nov 25, 2020

  1. Merge remote-tracking branch 'remotes/upstream/develop' into support/… 

    …HAFS
    @BinLiu-NOAA
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  2. Merge remote-tracking branch 'remotes/upstream/develop' into support/… 

    …HAFS
    @BinLiu-NOAA
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  3. Merge branch 'support/HAFS' of https://github.com/hafs-community/fv3atm… 

    … into support/HAFS
    @BinLiu-NOAA
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Commits on Dec 12, 2020

  1. Merge remote-tracking branch 'remotes/upstream/develop' into support/… 

    …HAFS
    @BinLiu-NOAA
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  2. Add a new HAFS suite: suite_HAFS_v0_gfdlmp_nonsstugwd.xml, turning on… 

    … the convection.
    @BinLiu-NOAA
    BinLiu-NOAA committed Dec 12, 2020
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Commits on Jan 7, 2021

  1. Merge remote-tracking branch 'remotes/upstream/develop' into support/… 

    …HAFS
    @BinLiu-NOAA
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Commits on Jan 11, 2021

  1. Add corners to regional grid with gridAlign -1,-1. Add write_grid_netcdf 

    for diagnostics.
    @danrosen25
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Commits on Jan 21, 2021

  1. Merge remote-tracking branch 'remotes/upstream/develop' into support/… 

    …HAFS
    @BinLiu-NOAA
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Commits on Jan 22, 2021

  1. Initial Moving Nest Functionality

    @wramstrom
    wramstrom committed Jan 22, 2021
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  2. Merge branch 'support/HAFS' into feature/hafs_moving_nest

    @BinLiu-NOAA
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Commits on Jan 28, 2021

  1. Add a new ccpp SDF: suite_HAFS_v0_gfdlmp_nonsst.xml

    @BinLiu-NOAA
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Commits on Feb 2, 2021

  1. Merge remote-tracking branch 'remotes/upstream/develop' into support/… 

    …HAFS

Conflicts:
	ccpp/physics
    @BinLiu-NOAA
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Commits on Feb 6, 2021

  1. Update submodule atmos_cubed_sphere

    @BinLiu-NOAA
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Commits on Feb 10, 2021

  1. Merge branch 'support/HAFS' into feature/hafs_moving_nest

    @BinLiu-NOAA
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Commits on Mar 12, 2021

  1. Merge remote-tracking branch 'remotes/upstream/develop' into support/… 

    …HAFS
    @BinLiu-NOAA
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Commits on Mar 31, 2021

  1. Merge remote-tracking branch 'remotes/upstream/develop' into support/… 

    …HAFS
    @BinLiu-NOAA
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Commits on Apr 1, 2021

  1. Merge remote-tracking branch 'remotes/upstream/develop' into support/… 

    …HAFS
    @BinLiu-NOAA
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Commits on Apr 2, 2021

  1. Add a new PBL diagnostic variable dkudiagnostic: atmosphere momentum … 

    …diffusivity.

From @ChunxiZhang-NOAA and @AndrewHazelton
    @BinLiu-NOAA
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  2. Update submodule ccpp/physics.

    @BinLiu-NOAA
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Commits on Apr 5, 2021

  1. Merge branch 'support/HAFS' into feature/hafs_moving_nest 

    (Bill, Kyle, Xuejin, Bin)
    @BinLiu-NOAA
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Commits on Apr 6, 2021

  1. Update submodule atmos_cubed_sphere.

    @BinLiu-NOAA
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Commits on Apr 8, 2021

  1. Add two ccpp suites: HAFS_v0_gfdlmp_tedmf_nonsst and HAFS_v0_gfdlmp_t… 

    …edmf (Chunxi).
    @BinLiu-NOAA
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  2. Update submodule ccpp/physics.

    @BinLiu-NOAA
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Commits on Apr 12, 2021

  1. Update module_fcst_grid_comp.F90 from Rusty Benson to fix the warning… 

    … message

of wrongly opened coupler.res files when having more than 3 nests.
    @BinLiu-NOAA
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  2. Merge remote-tracking branch 'origin/feature/multi_nests' into featur… 

    …e/hafs_moving_nest
    @BinLiu-NOAA
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Commits on Apr 16, 2021

  1. Merge remote-tracking branch 'upstream/develop' into support/HAFS

    @BinLiu-NOAA
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  2. Merge remote-tracking branch 'remotes/upstream/develop' into feature/… 

    …dkudiagnostic
    @BinLiu-NOAA
    BinLiu-NOAA committed Apr 16, 2021
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  3. Rename dkudiagnostic into dku and add dkt as a diagnostic variable. 

    Contributors: Andrew Hazelton, Chunxi Zhang, Bin Liu
    @BinLiu-NOAA
    BinLiu-NOAA committed Apr 16, 2021
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  4. Merge branch 'feature/dkudiagnostic' into support/HAFS

    @BinLiu-NOAA
    BinLiu-NOAA committed Apr 16, 2021
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  5. Update submodule ccpp/physics.

    @BinLiu-NOAA
    BinLiu-NOAA committed Apr 16, 2021
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  6. Merge branch 'feature/dkudiagnostic' into support/HAFS

    @BinLiu-NOAA
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  7. Use unique standard_name for the new added dkt and dku diagnostic var… 

    …iables in

GFS_typedefs.meta.
Contributors: Chunxi Zhang and Bin Liu
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  8. Merge remote-tracking branch 'remotes/origin/feature/dkudiagnostic' i… 

    …nto support/HAFS
    @BinLiu-NOAA
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  9. Merge remote-tracking branch 'remotes/origin/feature/hafsv0.2_phase2'… 

    … into support/HAFS
    @BinLiu-NOAA
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Commits on Apr 17, 2021

  1. Point to support/HAFS branch of hafs-community fork of GFDL_atmos_cub… 

    …ed_sphere.
    @BinLiu-NOAA
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  2. Update submodule atmos_cubed_sphere.

    @BinLiu-NOAA
    BinLiu-NOAA committed Apr 17, 2021
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Commits on Apr 20, 2021

  1. *Unify the usage of Diag%dkt and Interstitial%dkt and change the stan… 

    …dard_names

for dkt/dku back to atmosphere_heat/momentum_diffusivity.
*Update submodule ccpp/physics.
    @BinLiu-NOAA
    BinLiu-NOAA committed Apr 20, 2021
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  2. Merge remote-tracking branch 'remotes/origin/feature/dkudiagnostic' i… 

    …nto support/HAFS
    @BinLiu-NOAA
    BinLiu-NOAA committed Apr 20, 2021
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  3. Change to allocate Diag%dkt/dku with Model%levs-1 vertical levels in … 

    …GFS_typedefs.F90.
    @BinLiu-NOAA
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  4. Merge remote-tracking branch 'remotes/origin/feature/dkudiagnostic' i… 

    …nto support/HAFS
    @BinLiu-NOAA
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Commits on May 12, 2021

  1. Merge remote-tracking branch 'remotes/upstream/develop' into support/… 

    …HAFS
    @BinLiu-NOAA
    BinLiu-NOAA committed May 12, 2021
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Commits on May 19, 2021

  1. Add a cplice namelist option to deal with the situation that HAFS FV3… 

    …ATM-HYCOM

coupling without an active sea ice (e.g., CICE6) component. By default, the
cplice is true when cplflx is true (e.g., for the S2S application). However,
for the current HAFS FV3ATM-HYCOM coupling, cplice should set as false.  In the
future, it needs to be generalized/implemented to separate cplflx into cplocn
and cplice options.  (ChunxiZhang-NOAA and BinLiu-NOAA)
    @BinLiu-NOAA
    BinLiu-NOAA committed May 19, 2021
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Commits on May 25, 2021

  1. fix for wave coupling with cmeps

    Ufuk Turuncoglu committed May 25, 2021
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  2. revert mods in cap and move it to ccpp level for now

    Ufuk Turuncoglu committed May 25, 2021
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Commits on May 26, 2021

  1. add white space again

    Ufuk Turuncoglu committed May 26, 2021
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  2. Convert the parameter variables rlmx and elmx (maximum allowed mixing… 

    … length

and dissipation mixing length in the GFS scale-aware TKE EDMF PBL scheme) into
namelist options. The default value for rlmx/elmx is 300.0 (unchanged). But
this allows developers to easily test rlmx/elmx with other values (e.g., using
100.0 in HAFS). These changes were made by ChunxiZhang-NOAA and BinLiu-NOAA
based on the rlmx/elmx value of 100.0 used by AndrewHazelton-NOAA.
    @BinLiu-NOAA
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Commits on May 27, 2021

  1. Merge remote-tracking branch 'remotes/origin/support/HAFS' into featu… 

    …re/hafs_coupleww3
    @BinLiu-NOAA
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Commits on May 28, 2021

  1. Added call to perform moving nest at higher level, to allow access to… 

    … physics variables.
    @wramstrom
    wramstrom committed May 28, 2021
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Commits on Jun 2, 2021

  1. *Update the interface and location to call the udpate_moving_nest. 

    *Update submodule atmos_cubed_sphere.
Note: Coding session among Bill, Xuejin, Kyle, Zhan, Chunxi, Weiguo, Bin
    @BinLiu-NOAA
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Commits on Jun 9, 2021

  1. Enable MOVING_NEST flag for this level of the build. Correct module n… 

    …ame for moving nest in atmos_model.F90.
    @wramstrom
    wramstrom committed Jun 9, 2021
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Commits on Jun 10, 2021

  1. Added call for debugging output of moving nest variables to netCDF fi… 

    …les.
    @wramstrom
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Commits on Jun 15, 2021

  1. *FV3 level changes needed for WeiguoWang-NOAA's modification of near-… 

    …surface

mixing length in GFS sa-TKE EDMF PBL scheme. A new namelist option of sfc_rlm
was added to control this change, default value is 0 corresponding to no change.
The value of 1 will use zk for elm within the near-surface layer.
Contributors: WeiguoWang-NOAA, ChunxiZhang-NOAA, ZhanZhang-NOAA, BinLiu-NOAA
    @BinLiu-NOAA
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Commits on Jun 21, 2021

  1. Merge remote-tracking branch 'remotes/origin/support/HAFS' into featu… 

    …re/hafs_coupleww3
    @BinLiu-NOAA
    BinLiu-NOAA committed Jun 21, 2021
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Commits on Jun 30, 2021

  1. Make GFS_init() public so that moving nest code can reset lat/lon val… 

    …ues for physics arrays after nest move.
    @wramstrom
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Commits on Jul 9, 2021

  1. Merge remote-tracking branch 'remotes/upstream/develop' into feature/… 

    …hafs_sync_202107
    @BinLiu-NOAA
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Commits on Jul 13, 2021

  1. Merge remote-tracking branch 'upstream/develop' into feature/hafs_syn… 

    …c_202107
    @BinLiu-NOAA
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Commits on Jul 14, 2021

  1. Merge remote-tracking branch 'remotes/origin/support/HAFS' into featu… 

    …re/hafs_coupleww3
    @BinLiu-NOAA
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Commits on Jul 16, 2021

  1. Merge remote-tracking branch 'remotes/upstream/develop' into feature/… 

    …hafs_sync_202107
    @BinLiu-NOAA
    BinLiu-NOAA committed Jul 16, 2021
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  2. Clean up and rename some HAFS related CCPP suites.

    @BinLiu-NOAA
    BinLiu-NOAA committed Jul 16, 2021
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Commits on Jul 17, 2021

  1. Merge remote-tracking branch 'upstream/develop' into feature/hafs_syn… 

    …c_202107
    @BinLiu-NOAA
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  2. Merge remote-tracking branch 'remotes/origin/support/HAFS' into featu… 

    …re/hafs_coupleww3
    @BinLiu-NOAA
    BinLiu-NOAA committed Jul 17, 2021
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Commits on Jul 19, 2021

  1. Merge remote-tracking branch 'remotes/origin/support/HAFS' into featu… 

    …re/hafs_coupleww3
    @BinLiu-NOAA
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Commits on Jul 25, 2021

  1. Merge remote-tracking branch 'remotes/upstream/develop' into support/… 

    …HAFS
    @BinLiu-NOAA
    BinLiu-NOAA committed Jul 25, 2021
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Commits on Jul 30, 2021

  1. Merge remote-tracking branch 'remotes/upstream/develop' into feature/… 

    …hafs_sync_202107
    @BinLiu-NOAA
    BinLiu-NOAA committed Jul 30, 2021
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Commits on Jul 31, 2021

  1. Update HAFS FV3 PR355 with change requests 

    * Remove merge_import and debug_merge from atmos_model_nml
* Add cpl_imp_mrg and cpl_imp_dbg to GFS_control (gfs_physics_nml)
* Remove diagnostic, replaced with existing cplprint_flag (DumpFields)
* Move write_grid_netcdf to wrt_fcst_grid in module_fcst_grid_comp.F90
* Update atmos_cubed_sphere submodule to match NOAA-GFDL/dev/emc
    @danrosen25
    danrosen25 committed Jul 31, 2021
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Commits on Aug 1, 2021

  1. Update submodule GFDL_atmos_cubed_sphere.

    @BinLiu-NOAA
    BinLiu-NOAA committed Aug 1, 2021
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Commits on Aug 5, 2021

  1. Update submodule ccpp/physics.

    @BinLiu-NOAA
    BinLiu-NOAA committed Aug 5, 2021
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  2. Merge remote-tracking branch 'remotes/upstream/develop' into support/… 

    …HAFS
    @BinLiu-NOAA
    BinLiu-NOAA committed Aug 5, 2021
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  3. Update .gitmodules and submodule atmos_cubed_sphere.

    @BinLiu-NOAA
    BinLiu-NOAA committed Aug 5, 2021
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  4. Update .gitmodules.

    @BinLiu-NOAA
    BinLiu-NOAA committed Aug 5, 2021
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Commits on Aug 23, 2021

  1. Add the cplocn2atm namelist option to turn on/off ocean feedback to F… 

    …V3atm (#7)

Currently, when running coupled configurations/applications (e.g., HAFS or S2S). There is no available option to control one-way coupling to turn off the ocean model component feedback (e.g., SST) to FV3ATM.

Similar to the cplwav2atm namelist option, add a cplocn2atm namelist option to turn on/off the ocean model component feedback (e.g., SST) to the atmosphere model component. This is useful to control the one-way or two-way atmosphere-ocean coupling, as well as to configure different combinations for the atmosphere-ocean-wave coupling in HAFS and/or other applications.
    @BinLiu-NOAA
    BinLiu-NOAA authored Aug 23, 2021
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Commits on Aug 27, 2021

  1. *Add atmos_cubed_sphere/model/fv_tracker.F90 in CMakeLists.txt 

    *Update submodule atmos_cubed_sphere with FV3 internal tracker needed changes.
    @BinLiu-NOAA
    BinLiu-NOAA committed Aug 27, 2021
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  2. Update submodule atmos_cubed_sphere.

    @BinLiu-NOAA
    BinLiu-NOAA committed Aug 27, 2021
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Commits on Aug 28, 2021

  1. Merge remote-tracking branch 'remotes/origin/feature/hafs_moving_nest… 

    …' into feature/hafs_vortex_tracking
    @BinLiu-NOAA
    BinLiu-NOAA committed Aug 28, 2021
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  2. Update submodule atmos_cubed_sphere and now feature/hafs_vortex_track… 

    …ing can build successfully.
    @BinLiu-NOAA
    BinLiu-NOAA committed Aug 28, 2021
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Commits on Aug 31, 2021

  1. Update submodule atmos_cubed_sphere.

    @BinLiu-NOAA
    BinLiu-NOAA committed Aug 31, 2021
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Commits on Sep 10, 2021

  1. Update submodule atmos_cubed_sphere.

    @BinLiu-NOAA
    BinLiu-NOAA committed Sep 10, 2021
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  2. Merge remote-tracking branch 'remotes/upstream/develop' into support/… 

    …HAFS
    @BinLiu-NOAA
    BinLiu-NOAA committed Sep 10, 2021
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Commits on Sep 17, 2021

  1. Update submodule atmos_cubed_sphere.

    @BinLiu-NOAA
    BinLiu-NOAA committed Sep 17, 2021
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  2. Update submodule atmos_cubed_sphere.

    @BinLiu-NOAA
    BinLiu-NOAA committed Sep 17, 2021
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Commits on Sep 30, 2021

  1. Update .gitmodules

    @DusanJovic-NOAA
    DusanJovic-NOAA committed Sep 30, 2021
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  2. Update submodule atmos_cubed_sphere.

    @BinLiu-NOAA
    BinLiu-NOAA committed Sep 30, 2021
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  3. Create multiple fcstGrid objects, one for each fv3 grid

    @DusanJovic-NOAA
    DusanJovic-NOAA committed Sep 30, 2021
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  4. Use pelist(1) as rootPet when broadcasting from top-level-domain

    @DusanJovic-NOAA
    DusanJovic-NOAA committed Sep 30, 2021
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  5. Moved moving nest physics routines into separate file. Combined movin… 

    …g nest logging and utils.
    @wramstrom
    wramstrom committed Sep 30, 2021
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Commits on Oct 1, 2021

  1. Update submodule atmos_cubed_sphere.

    @BinLiu-NOAA
    BinLiu-NOAA committed Oct 1, 2021
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  2. Merge remote-tracking branch 'remotes/origin/support/HAFS' into featu… 

    …re/hafs_nesting
    @BinLiu-NOAA
    BinLiu-NOAA committed Oct 1, 2021
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  3. Merge remote-tracking branch 'remotes/upstream/develop' into feature/… 

    …hafs_nesting

Working session among @wramstrom, @BinLiu-NOAA, @Xuejin-Zhang, @ChunxiZhang-NOAA, @A-Kyle.
    @BinLiu-NOAA
    BinLiu-NOAA committed Oct 1, 2021
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Commits on Oct 6, 2021

  1. Add module use line for mpp_set_current_pelist in module_fcst_grid_co… 

    …mp.F90.

Update submodule atmos_cubed_sphere.
    @BinLiu-NOAA
    BinLiu-NOAA committed Oct 6, 2021
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Commits on Oct 12, 2021

  1. Enable 64 bit compiles

    @wramstrom
    wramstrom committed Oct 12, 2021
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  2. Additional changes to permit 32bit/64bit compiles.

    @wramstrom
    wramstrom committed Oct 12, 2021
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Commits on Oct 26, 2021

  1. Adapted moving nest code to handle new UFS weather model version of a… 

    …lbedo and lake handling.
    @wramstrom
    wramstrom committed Oct 26, 2021
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Commits on Nov 2, 2021

  1. Added t-dependent lon-lat (grid_mlont, grid_mlatt) to fv_diagnostics

    A-Kyle committed Nov 2, 2021
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  2. Merge remote-tracking branch 'remotes/upstream/develop' into support/… 

    …HAFS
    @BinLiu-NOAA
    BinLiu-NOAA committed Nov 2, 2021
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Commits on Nov 3, 2021

  1. Create multiple forecast grids

    @DusanJovic-NOAA
    DusanJovic-NOAA committed Nov 3, 2021
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Commits on Nov 4, 2021

  1. Merge remote-tracking branch 'upstream/develop' into support/HAFS

    @BinLiu-NOAA
    BinLiu-NOAA committed Nov 4, 2021
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Commits on Nov 17, 2021

  1. Added moving nest functionality for neststruct%i/j stagger.

    @wramstrom
    wramstrom committed Nov 17, 2021
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Commits on Nov 19, 2021

  1. Merge remote-tracking branch 'remotes/origin/support/HAFS' into featu… 

    …re/hafs_nesting
    @BinLiu-NOAA
    BinLiu-NOAA committed Nov 19, 2021
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Commits on Nov 20, 2021

  1. Merge remote-tracking branch 'remotes/upstream/develop' into feature/… 

    …hafs_nesting
    @BinLiu-NOAA
    BinLiu-NOAA committed Nov 20, 2021
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Commits on Dec 3, 2021

  1. Added preliminary land masked interpolation for moving nest.

    @wramstrom
    wramstrom committed Dec 3, 2021
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Commits on Dec 14, 2021

  1. update submodule atmos_cubed_sphere.

    A-Kyle committed Dec 14, 2021
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  2. Regional Moving Nest Enabled. Fixed moving nest for land emissivity a… 

    …nd land albedo. Static surface files renamed.
    @wramstrom
    wramstrom committed Dec 14, 2021
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Commits on Dec 15, 2021

  1. Merge commit '4545b4dfa0d20ce7106881b3d93d6e74b5e7b006' into feature/… 

    …hafs_nesting
    @BinLiu-NOAA
    BinLiu-NOAA committed Dec 15, 2021
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Commits on Dec 17, 2021

  1. Moving Nest updates for emis_lnd and emis_wat.

    @wramstrom
    wramstrom committed Dec 17, 2021
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Commits on Jan 4, 2022

  1. Merge remote-tracking branch 'origin/develop' into multiple_output_grids

    @DusanJovic-NOAA @dusanjovic
    DusanJovic-NOAA authored and dusanjovic committed Jan 4, 2022
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Commits on Jan 5, 2022

  1. Update submodule atmos_cubed_sphere.

    @BinLiu-NOAA
    BinLiu-NOAA committed Jan 5, 2022
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  2. Update after merge

    @DusanJovic-NOAA
    DusanJovic-NOAA committed Jan 5, 2022
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  3. Add missing error handling.

    @theurich
    theurich committed Jan 5, 2022
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Commits on Jan 27, 2022

  1. No memory profiling by default (reduce log volume). Re-enable the Gri… 

    …dCompDestroy() during Finalize().
    @theurich
    theurich committed Jan 27, 2022
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  2. Merge remote-tracking branch 'origin/develop' into multiple_output_grids

    @DusanJovic-NOAA
    DusanJovic-NOAA committed Jan 27, 2022
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  3. Add support for multiple output grids

    @DusanJovic-NOAA
    DusanJovic-NOAA committed Jan 27, 2022
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Commits on Jan 28, 2022

  1. Make app_domain an array (one element per output grid). Code cleanup.

    @DusanJovic-NOAA
    DusanJovic-NOAA committed Jan 28, 2022
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  2. Remove some unused variables

    @DusanJovic-NOAA
    DusanJovic-NOAA committed Jan 28, 2022
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Commits on Jan 29, 2022

  1. Remove 'app_domain' config parameter

    @DusanJovic-NOAA
    DusanJovic-NOAA committed Jan 29, 2022
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  2. Merge commit 'a9e79095120c90ea753d070d5d83dd01ac9464d4' into feature/… 

    …hafs_nesting
    @BinLiu-NOAA
    BinLiu-NOAA committed Jan 29, 2022
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Commits on Jan 30, 2022

  1. Added patch for nest motion of surface emissivity and albedo.

    @wramstrom
    wramstrom committed Jan 30, 2022
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  2. Adding patch for surface emissivity for moving nest. 

    Merge branch 'feature/hafs_nesting' of https://github.com/hafs-community/fv3atm into feature/hafs_nesting
    @wramstrom
    wramstrom committed Jan 30, 2022
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Commits on Jan 31, 2022

  1. Merge branch 'feature/hafs_nesting' of https://github.com/hafs-commun… 

    …ity/fv3atm into feature/hafs_nesting
    @BinLiu-NOAA
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  2. Update submodule atmos_cubed_sphere.

    @BinLiu-NOAA
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  3. Create global fcstGrid by assigning lat/lon coordinates instead of re… 

    …ading them from mosaic file
    @DusanJovic-NOAA
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  4. Implement unified specification of output grids within model_configur… 

    …e. Fix a couple of comments.
    @theurich
    theurich committed Jan 31, 2022
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Commits on Feb 2, 2022

  1. Merge remote-tracking branch 'origin/develop' into multiple_output_grids

    @DusanJovic-NOAA
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  2. Merge remote-tracking branch 'remotes/DJ/multiple_output_grids' into … 

    …feature/hafs_nesting
    @BinLiu-NOAA
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  3. Change the name of the nest output files

    @DusanJovic-NOAA
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Commits on Feb 3, 2022

  1. Merge remote-tracking branch 'DJ/multiple_output_grids' into feature/… 

    …hafs_nesting
    @BinLiu-NOAA
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Commits on Feb 4, 2022

  1. Use ESMF_GridCreateNoPeriDim for regional output grids

    @DusanJovic-NOAA
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Commits on Feb 7, 2022

  1. Merge remote-tracking branch 'DJ/multiple_output_grids' into feature/… 

    …hafs_nest_sync
    @BinLiu-NOAA
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  2. Only enter moving nest code for moving nest configurations

    @wramstrom
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  3. Only enter moving nest code for moving nest configurations. 

    Merge branch 'feature/hafs_nest_sync' of https://github.com/hafs-community/fv3atm into feature/hafs_nest_sync
    @wramstrom
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Commits on Feb 8, 2022

  1. Code cleanup of moving nest modules

    @wramstrom
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Commits on Feb 9, 2022

  1. Use same global attributes for global_latlon and regional_latlon

    @DusanJovic-NOAA
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  2. Fix coupling pass-thru to fcstComp subdomain 

    * add input namelist option cpl_grid_id (1=parent)
* run state_diagnose for sparse fields (localDeCount.gt.0)
* move NUOPC_Advertise and NUOPC_Realize into fcstComp subdomain (a.k.a.
  'nests')
* move add grid coordinates and mask into SetServicesNest after grid
* create
* remove conditions for adding grid mask (previously no mask on nested
  configurations)
    @danrosen25
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Commits on Feb 10, 2022

  1. Merge remote-tracking branch 'DJ/multiple_output_grids' into feature/… 

    …hafs_nest_sync
    @BinLiu-NOAA
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  2. Merge remote-tracking branch 'origin/develop' into multiple_output_grids

    @DusanJovic-NOAA
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  3. Deallocate lon_start_wrtgrp/lon_end_wrtgrp arrays

    @DusanJovic-NOAA
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  4. Remove ESMF_VMBarrier from ModelFinalize

    @DusanJovic-NOAA
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Commits on Feb 11, 2022

  1. Added doxygen comments and regularized indentation.

    @wramstrom
    wramstrom committed Feb 11, 2022
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  2. Added doxygen comments and regularized indentation. 

    Merge branch 'feature/hafs_nest_sync' of https://github.com/hafs-community/fv3atm into feature/hafs_nest_sync
    @wramstrom
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  3. Nullify local array (pelist) fcst_grid_comp before calling atmos_mode… 

    …l_get_nth_domain_info()
    @DusanJovic-NOAA
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  4. Update atmos_cubed_sphere

    @DusanJovic-NOAA
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Commits on Feb 13, 2022

  1. *Add the capability of downscaling the coupling variables (e.g., SST)… 

    … from the

parent grid into the nested grid. This is needed since only the atmospheric
parent grid is coupled to other model components currently.
*Update the logic to determine the moving_nesting property.
    @BinLiu-NOAA
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Commits on Feb 14, 2022

  1. Merge remote-tracking branch 'remotes/DJ/multiple_output_grids' into … 

    …feature/hafs_nest_cpl
    @BinLiu-NOAA
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  2. Connected move_nsst to namelist option.

    @wramstrom
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Commits on Feb 15, 2022

  1. Revised namelist options for move_nsst in moving nest.

    @wramstrom
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  2. Moving nest for physics ifd only if using NSST.

    @wramstrom
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  3. Use moving_nest_parent and is_moving_nest to identify moving nest par… 

    …ent grid

and moving nest grid.
    @BinLiu-NOAA
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  4. Merge remote-tracking branch 'remotes/upstream/develop' into feature/… 

    …hafs_nest_cpl
    @BinLiu-NOAA
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Commits on Feb 16, 2022

  1. Update submodule atmos_cubed_sphere.

    @BinLiu-NOAA
    BinLiu-NOAA committed Feb 16, 2022
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Commits on Feb 17, 2022

  1. Minor correction, clean-up and simplification around domain specific … 

    …advertise/realize. (#9)

Minor correction, clean-up and simplification around domain specific advertise/realize.
Co-authored-by: Gerhard Theurich <theurich@sourcespring.net>
Co-authored-by: Daniel Rosen <daniel.rosen@noaa.gov>
    @BinLiu-NOAA
    BinLiu-NOAA authored Feb 17, 2022
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Commits on Feb 18, 2022

  1. Update submodule atmos_cubed_sphere.

    @BinLiu-NOAA
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Commits on Feb 25, 2022

  1. Upgrade to read in monthly high-resolution albedo information for mov… 

    …ing nest.
    @wramstrom
    wramstrom committed Feb 25, 2022
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Commits on Feb 26, 2022

  1. Implement moving nest output. For moving domains, the Regrid() is 

    offloaded to the wrtComp. In that case use a simple Redist() to
move data, and coordinate updates from fcstComp to wrtComp. This
can be done with static RouteHandles, since the distribution does
not change. The wrtComp deals with the Regrid() problem, re-computing
new RouteHandles each output step for moving domains. The actual
output grid is static in this implementation.
    @theurich
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Commits on Feb 28, 2022

  1. Handle moving nest interpolation of sfc roughness variables with land… 

    … mask
    @wramstrom
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Commits on Mar 2, 2022

  1. Merge remote-tracking branch 'remotes/upstream/develop' into feature/… 

    …hafs_nest_cpl
    @BinLiu-NOAA
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  2. Merge branch 'feature/hafs_nest_cpl' of https://github.com/hafs-commu… 

    …nity/fv3atm into feature/hafs_nest_cpl
    @BinLiu-NOAA
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Commits on Mar 3, 2022

  1. Reapply handling of NSST being turned off for coupled runs.

    @wramstrom
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Commits on Mar 4, 2022

  1. Merge remote-tracking branch 'remotes/origin/feature/hafs_nest_cpl' i… 

    …nto feature/hafs_nest_cpl_moving
    @BinLiu-NOAA
    BinLiu-NOAA committed Mar 4, 2022
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Commits on Mar 9, 2022

  1. Added Doxygen documentation and code cleanup.

    @wramstrom
    wramstrom committed Mar 9, 2022
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  2. Add zsurf to diag fields for moving nest.

    A-Kyle committed Mar 9, 2022
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Commits on Mar 10, 2022

  1. Add lon_cen and lat_cen (grid center longitude and latitude in radian… 

    …s) in

atmos_data_type, which will be updated when calling atmosphere_grid_ctr for the
moving nesting configuration. This is to support movable output grid for the
write grid component to ouput moving nest domain properly/efficiently.
    @BinLiu-NOAA
    BinLiu-NOAA committed Mar 10, 2022
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  2. Updated formatting of header comments.

    @wramstrom
    wramstrom committed Mar 10, 2022
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Commits on Mar 11, 2022

  1. Implement regridmethod specific tracing for moving nest regridding.

    @theurich
    theurich committed Mar 11, 2022
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  2. Merge remote-tracking branch 'origin/feature/hafs_nest_cpl_movable_ou… 

    …tgrid' into feature/hafs_nest_cpl_moving
    @theurich
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  3. Remove MOVING_NEST after #endif. GNU compiler complains about extra t… 

    …oken at

the end of #ifdef directive. (Suggested by @DusanJovic-NOAA)
    @BinLiu-NOAA
    BinLiu-NOAA committed Mar 11, 2022
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  4. Implement center coord determination for moving transferred grids.

    @theurich
    theurich committed Mar 11, 2022
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Commits on Mar 12, 2022

  1. Add 'rotated_latlon_moving' output_grid (#10)

    @DusanJovic-NOAA
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  2. Revert "Add lon_cen and lat_cen (grid center longitude and latitude i… 

    …n radians) in atmos_data_type"

This reverts commit ead6f09.
    @BinLiu-NOAA
    BinLiu-NOAA committed Mar 12, 2022
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  3. Merge remote-tracking branch 'remotes/origin/feature/hafs_nest_cpl' i… 

    …nto feature/hafs_nest_cpl_movable_outgrid
    @BinLiu-NOAA
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Commits on Mar 13, 2022

  1. Add 'regional_latlon_moving' output_grid type for moving nest.

    @BinLiu-NOAA
    BinLiu-NOAA committed Mar 13, 2022
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  2. Optimize the code changes related the regional/rotated_latlon_moving … 

    …output

grid type in io/module_wrt_grid_comp.F90 (Based on suggestions from
@DusanJovic-NOAA).
    @BinLiu-NOAA
    BinLiu-NOAA committed Mar 13, 2022
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  3. Cosmetic indentation changes related to writ grid component support f… 

    …or moving nesting.
    @BinLiu-NOAA
    BinLiu-NOAA committed Mar 13, 2022
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Commits on Mar 14, 2022

  1. Update grid specification for rotated_latlon_moving and regional_latl… 

    …on_moving (#11)

* Update grid specification for rotated_latlon_moving and regional_latlon_moving
    @DusanJovic-NOAA
    DusanJovic-NOAA authored Mar 14, 2022
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Commits on Mar 15, 2022

  1. Fix the indentation of this lonPtr, latPtr line in io/module_wrt_grid… 

    …_comp.F90.
    @BinLiu-NOAA
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Commits on Mar 22, 2022

  1. Move cpl_grid_id to FV3 model attributes 

      * Set cpl_grid_id in nems.configure (default 1=parent)
    @danrosen25
    danrosen25 committed Mar 22, 2022
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  2. Update Coriolis terms after nest move.

    @wramstrom
    wramstrom committed Mar 22, 2022
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  3. Moving nest coriolis terms. 

    Merge branch 'feature/hafs_nest_cpl' of https://github.com/hafs-community/fv3atm into feature/hafs_nest_cpl
    @wramstrom
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Commits on Mar 23, 2022

  1. Merge pull request #12 from hafs-community/feature/hafs_nest_cpl_fixc… 

    …plgridid

Move cpl_grid_id to FV3 model attributes
    @BinLiu-NOAA
    BinLiu-NOAA authored Mar 23, 2022
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Commits on Mar 24, 2022

  1. Simplified call to EOSHIFT for compiler portability. Now omits BOUNDA… 

    …RY argument to use the default value of 0.0 (in single or double precision), instead of explicitly setting it to 0
    @wramstrom
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  2. Merging EOSHIFT update for compiler portability. 

    Merge branch 'feature/hafs_nest_cpl' of https://github.com/hafs-community/fv3atm into feature/hafs_nest_cpl
    @wramstrom
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Commits on Mar 25, 2022

  1. Merge remote-tracking branch 'remotes/upstream/develop' into feature/… 

    …hafs_nest_cpl
    @BinLiu-NOAA
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  2. Clean up trailing whitespace and update submodule atmos_cubed_sphere.

    @BinLiu-NOAA
    BinLiu-NOAA committed Mar 25, 2022
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Commits on Mar 26, 2022

  1. Update submodule atmos_cubed_sphere.

    @BinLiu-NOAA
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Commits on Mar 31, 2022

  1. Modularization of moving nest and automated storm tracker.

    @wramstrom
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  2. Modularization of moving nest and tracker. 

    Merge branch 'feature/hafs_nest_cpl' of https://github.com/hafs-community/fv3atm into feature/hafs_nest_cpl
    @wramstrom
    wramstrom committed Mar 31, 2022
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  3. Separate moving_nest code into its own directory.

    @wramstrom
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  4. Merge remote-tracking branch 'remotes/upstream/develop' into feature/… 

    …hafs_nest_cpl
    @BinLiu-NOAA
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  5. Update submodule atmos_cubed_sphere.

    @BinLiu-NOAA
    BinLiu-NOAA committed Mar 31, 2022
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  6. Made call to EOSHIFT portable to gfortran.

    @wramstrom
    wramstrom committed Mar 31, 2022
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  7. Removed commented-out code from fv_control.F90.

    @wramstrom
    wramstrom committed Mar 31, 2022
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  8. Revert logging output in fv_diagnostics.F90 to original format.

    @wramstrom
    wramstrom committed Mar 31, 2022
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Commits on Apr 1, 2022

  1. Update submodule atmos_cubed_sphere.

    @BinLiu-NOAA
    BinLiu-NOAA committed Apr 1, 2022
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  2. Remove moving nest debugging statements from dycore core.

    @wramstrom
    wramstrom committed Apr 1, 2022
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Commits on Apr 4, 2022

  1. Revert back to the original forecast grid definition using the ESMF c… 

    …oord

dimensions so that the FV3-GOCART coupled regression tests can run through
successfuly. (From @junwang-noaa)
    @BinLiu-NOAA
    BinLiu-NOAA committed Apr 4, 2022
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  2. Merge remote-tracking branch 'upstream/develop' into feature/hafs_nes… 

    …t_cpl
    @BinLiu-NOAA
    BinLiu-NOAA committed Apr 4, 2022
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  3. Typo fix to correctly add @junwang-noaa's fix. 

    Amend the Revert back to the original forecast grid definition using the ESMF
coord dimensions so that the FV3-GOCART coupled regression tests can run
through successfuly. (From @junwang-noaa)
    @BinLiu-NOAA
    BinLiu-NOAA committed Apr 4, 2022
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Commits on Apr 5, 2022

  1. Update module_fcst_grid_comp.F90 to restore the support for moving-ne… 

    …sting output

grid. (@junwang-noaa and @BinLiu-NOAA)
    @BinLiu-NOAA
    BinLiu-NOAA committed Apr 5, 2022
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Commits on Apr 6, 2022

  1. Moving nest bug fix for nest edge on prime meridian.

    @wramstrom
    wramstrom committed Apr 6, 2022
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  2. Allocate lon_bnd, lat_bnd arrays to be the same size as coordinate di… 

    …stgrid
    @DusanJovic-NOAA
    DusanJovic-NOAA committed Apr 6, 2022
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Commits on Apr 7, 2022

  1. Fix typos in comments

    @DusanJovic-NOAA
    DusanJovic-NOAA committed Apr 7, 2022
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Commits on Apr 8, 2022

  1. Ensure printing out the "PASS: fcstRUN phase ..." in the same line, s… 

    …o that one

can easily check/track the wallclock time for each time step.
    @BinLiu-NOAA
    BinLiu-NOAA committed Apr 8, 2022
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  2. Merge remote-tracking branch 'remotes/upstream/develop' into feature/… 

    …hafs_nest_cpl
    @BinLiu-NOAA
    BinLiu-NOAA committed Apr 8, 2022
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  3. Indentation fix in fv3_cap.F90.

    @BinLiu-NOAA
    BinLiu-NOAA committed Apr 8, 2022
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  4. Ensure printing out the "PASS: fcstRUN phase ..." in the same line, s… 

    …o that one

can easily check/track the wallclock time for each time step. Make it work for
both gnu and intel compilers.
    @BinLiu-NOAA
    BinLiu-NOAA committed Apr 8, 2022
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Commits on Apr 11, 2022

  1. Update submodule atmos_cubed_sphere.

    @BinLiu-NOAA
    BinLiu-NOAA committed Apr 11, 2022
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